Variant report

Variant	rs2012504
Chromosome Location	chr12:10113083-10113084
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73048857	0.87[ASN][1000 genomes]
rs7957596	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044587	chr12:10029514-10123414	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv523050	chr12:10031880-10124373	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv898755	chr12:10069302-10186284	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv975404	chr12:10102404-10114263	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs2012504	TAS2R43	cis	cerebellum	SCAN
rs2012504	LOC653113	cis	parietal	SCAN
rs2012504	TAS2R13	cis	parietal	SCAN

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10110200-10114200	Enhancers	Primary B cells from peripheral blood	blood
2	chr12:10110200-10115400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr12:10110800-10113400	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr12:10111200-10113400	Weak transcription	Dnd41	blood
5	chr12:10111400-10113200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr12:10111400-10113400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr12:10111400-10113400	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr12:10111400-10113400	Weak transcription	Fetal Thymus	thymus
9	chr12:10111400-10113600	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr12:10111600-10113200	Weak transcription	Primary T cells from cord blood	blood
11	chr12:10111600-10113400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr12:10112400-10114000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
13	chr12:10112800-10113200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr12:10112800-10113400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr12:10113000-10113200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr12:10113000-10113800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr12:10113000-10114000	Enhancers	Primary B cells from cord blood	blood
18	chr12:10113000-10114000	Enhancers	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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