Variant report

Variant	rs201258424
Chromosome Location	chr13:49039118-49039119
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832602	chr13:49003159-49167781	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv3362122	chr13:49038501-49046699	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1183843	chr13:49039117-49039118	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:49017400-49062200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr13:49018000-49062400	Weak transcription	Fetal Brain Male	brain
3	chr13:49020800-49062000	Weak transcription	Fetal Kidney	kidney
4	chr13:49021200-49058600	Weak transcription	Hela-S3	cervix
5	chr13:49023800-49061000	Weak transcription	Small Intestine	intestine
6	chr13:49023800-49073800	Weak transcription	NH-A	brain
7	chr13:49024000-49059000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr13:49025600-49041200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr13:49025600-49056800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr13:49025600-49066200	Weak transcription	Psoas Muscle	Psoas
11	chr13:49026600-49039400	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr13:49026800-49039400	Strong transcription	Dnd41	blood
13	chr13:49026800-49039600	Strong transcription	Primary B cells from peripheral blood	blood
14	chr13:49027000-49039800	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr13:49027200-49039200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr13:49027200-49039600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr13:49027200-49039800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr13:49027400-49039800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr13:49027600-49039800	Strong transcription	Skeletal Muscle Female	skeletal muscle
20	chr13:49027600-49049200	Weak transcription	A549	lung
21	chr13:49027800-49039200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr13:49027800-49043000	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr13:49028000-49039200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr13:49028000-49071000	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr13:49028600-49039800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
26	chr13:49029000-49046000	Weak transcription	HSMMtube	muscle
27	chr13:49029200-49062000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr13:49029400-49052400	Weak transcription	K562	blood
29	chr13:49030600-49070600	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr13:49031000-49039600	Strong transcription	Fetal Thymus	thymus
31	chr13:49031600-49049600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr13:49031600-49055800	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr13:49031600-49066200	Weak transcription	Rectal Smooth Muscle	rectum
34	chr13:49031800-49041200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr13:49031800-49045800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr13:49031800-49052000	Weak transcription	HepG2	liver
37	chr13:49031800-49052600	Weak transcription	Placenta	Placenta
38	chr13:49031800-49059200	Weak transcription	Primary T helper cells PMA-I stimulated	--
39	chr13:49031800-49060200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr13:49031800-49060600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr13:49031800-49065400	Weak transcription	Brain Substantia Nigra	brain
42	chr13:49032000-49050800	Weak transcription	Brain Hippocampus Middle	brain
43	chr13:49032000-49065600	Weak transcription	Brain Anterior Caudate	brain
44	chr13:49032000-49066200	Weak transcription	Colonic Mucosa	Colon
45	chr13:49032200-49053400	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr13:49032200-49054000	Weak transcription	Aorta	Aorta
47	chr13:49032200-49056000	Weak transcription	Brain Germinal Matrix	brain
48	chr13:49032400-49039200	Weak transcription	Primary neutrophils fromperipheralblood	blood
49	chr13:49032400-49040600	Weak transcription	Fetal Brain Female	brain
50	chr13:49032400-49049000	Weak transcription	Lung	lung

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