Variant report

Variant	rs201279761
Chromosome Location	chr11:58634861-58634862
allele	-/GA
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 94 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:94 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050013	chr11:58394598-59221090	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv948365	chr11:58515163-59156405	Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Genic enhancers Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	nsv1048605	chr11:58534660-58672438	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv1045858	chr11:58547772-58674568	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1052173	chr11:58553516-58678496	Enhancers Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	esv1827788	chr11:58595883-58636405	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3444895	chr11:58614102-58779384	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv508634	chr11:58624088-58657382	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv825924	chr11:58626835-58634921	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
10	esv1824025	chr11:58626835-58669877	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	esv1831269	chr11:58626835-58669877	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	nsv555117	chr11:58627834-58635436	Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
13	nsv555118	chr11:58627834-58635800	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
14	nsv555119	chr11:58627834-58636169	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
15	nsv555120	chr11:58627834-58636405	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
16	nsv819127	chr11:58629763-58635498	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
17	esv3461718	chr11:58629876-58638074	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
18	esv3461763	chr11:58631637-58636662	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
19	esv3461730	chr11:58631695-58636643	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
20	esv3461752	chr11:58631696-58636628	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
21	nsv435928	chr11:58631698-58636823	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
22	esv3461741	chr11:58631708-58636581	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
23	esv3461774	chr11:58631758-58636559	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
24	esv3461785	chr11:58631773-58636556	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
25	esv13443	chr11:58631790-58636511	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
26	nsv555121	chr11:58632368-58634865	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
27	nsv555122	chr11:58632368-58635056	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
28	nsv555123	chr11:58632368-58635436	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
29	nsv555124	chr11:58632368-58635616	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
30	nsv555125	chr11:58632368-58635800	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
31	nsv555126	chr11:58632368-58636169	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
32	nsv555127	chr11:58632368-58636352	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
33	esv1816175	chr11:58632368-58636405	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
34	esv1819737	chr11:58632368-58636405	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
35	esv1819761	chr11:58632368-58636405	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
36	esv1821792	chr11:58632368-58636405	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
37	esv1822517	chr11:58632368-58636405	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
38	esv1825121	chr11:58632368-58636405	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
39	esv1825131	chr11:58632368-58636405	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
40	esv1825281	chr11:58632368-58636405	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
41	esv1826685	chr11:58632368-58636405	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
42	esv1826814	chr11:58632368-58636405	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
43	esv1845623	chr11:58632368-58636405	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
44	esv1848162	chr11:58632368-58636405	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
45	nsv555128	chr11:58632368-58636405	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
46	nsv555129	chr11:58632368-58637994	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
47	nsv555130	chr11:58632368-58638015	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
48	nsv555131	chr11:58632368-58645098	Weak transcription Enhancers ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
49	nsv528475	chr11:58632368-58656808	Enhancers ZNF genes & repeats Active TSS Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
50	esv1849904	chr11:58632395-58635800	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58631400-58635000	Enhancers	Thymus	Thymus
2	chr11:58634000-58635800	Enhancers	NHEK	skin
3	chr11:58634200-58635600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:58634400-58635000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:58634400-58635600	Enhancers	HMEC	breast
6	chr11:58634800-58635400	Enhancers	NHDF-Ad	bronchial
7	chr11:58634800-58635600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links