Variant report

Variant	rs201300897
Chromosome Location	chr6:143122419-143122420
allele	-/AATGT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143122037..143125771-chr6:143264772..143267581,3	MCF-7	breast:
2	chr6:143116694..143119328-chr6:143121007..143124845,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000010818	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv830829	chr6:143058408-143218077	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv1019558	chr6:143121577-143154554	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143096200-143140800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr6:143103600-143124800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr6:143103800-143125400	Weak transcription	Fetal Thymus	thymus
4	chr6:143105800-143140400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr6:143106000-143128200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr6:143106000-143140400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr6:143108800-143123600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr6:143112200-143139400	Weak transcription	HepG2	liver
9	chr6:143113200-143140400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:143114200-143140800	Weak transcription	Fetal Muscle Leg	muscle
11	chr6:143116000-143125400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr6:143116000-143139600	Weak transcription	Small Intestine	intestine
13	chr6:143116200-143132200	Weak transcription	Fetal Brain Female	brain
14	chr6:143117000-143129400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr6:143117000-143140800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr6:143117600-143122800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr6:143118000-143123200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr6:143118000-143126200	Weak transcription	Right Ventricle	heart
19	chr6:143118000-143132200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr6:143118000-143137600	Weak transcription	Right Atrium	heart
21	chr6:143118200-143123200	Weak transcription	Fetal Heart	heart
22	chr6:143118200-143123200	Weak transcription	HSMMtube	muscle
23	chr6:143118600-143123000	Weak transcription	HMEC	breast
24	chr6:143119600-143122600	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr6:143119600-143123200	Weak transcription	Brain Cingulate Gyrus	brain
26	chr6:143119600-143129600	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr6:143119800-143122800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr6:143119800-143123200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr6:143119800-143126200	Weak transcription	Left Ventricle	heart
30	chr6:143119800-143126200	Weak transcription	Thymus	Thymus
31	chr6:143119800-143130000	Weak transcription	Brain Substantia Nigra	brain
32	chr6:143120200-143122600	Weak transcription	Primary B cells from cord blood	blood
33	chr6:143120200-143124200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr6:143120400-143124400	Enhancers	Osteobl	bone
35	chr6:143120400-143125400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr6:143120600-143123200	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr6:143120800-143123600	Genic enhancers	Primary T helper cells PMA-I stimulated	--
38	chr6:143120800-143124000	Enhancers	NHDF-Ad	bronchial
39	chr6:143121000-143122600	Weak transcription	Primary T cells from cord blood	blood
40	chr6:143121000-143123200	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr6:143121000-143123600	Enhancers	Brain Angular Gyrus	brain
42	chr6:143121000-143123800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr6:143121000-143124200	Enhancers	Muscle Satellite Cultured Cells	--
44	chr6:143121000-143126200	Weak transcription	Aorta	Aorta
45	chr6:143121000-143133000	Weak transcription	Pancreas	Pancrea
46	chr6:143121200-143123200	Weak transcription	Psoas Muscle	Psoas
47	chr6:143121200-143123400	Weak transcription	Fetal Brain Male	brain
48	chr6:143121200-143125600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr6:143121200-143138400	Weak transcription	Primary B cells from peripheral blood	blood
50	chr6:143121400-143122600	Weak transcription	GM12878-XiMat	blood

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