Variant report

Variant	rs201314778
Chromosome Location	chr17:59432414-59432415
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:20)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:20 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:59432229..59434125-chr6:26159107..26161207,2	MCF-7	breast:
2	chr11:62607355..62609135-chr17:59432154..59434226,2	MCF-7	breast:
3	chr17:59432176..59433169-chr20:49410896..49412253,5	MCF-7	breast:
4	chr17:59429709..59432657-chr9:4983973..4985982,2	MCF-7	breast:
5	chr17:59415713..59496229-chr20:49401322..49431802,760	MCF-7	breast:
6	chr17:59431484..59435446-chr20:45986968..45991365,6	MCF-7	breast:
7	chr17:59432266..59434288-chr20:49378342..49380019,3	MCF-7	breast:
8	chr17:59431671..59434197-chr6:27862037..27863742,2	MCF-7	breast:
9	chr17:59431974..59432671-chr17:59463189..59463785,2	MCF-7	breast:
10	chr17:59431777..59434735-chr20:45833557..45835655,2	MCF-7	breast:
11	chr17:59431944..59433160-chr17:59466956..59468905,13	MCF-7	breast:
12	chr14:38066762..38068262-chr17:59431562..59433870,3	MCF-7	breast:
13	chr17:59406940..59447393-chr20:49402944..49426846,176	MCF-7	breast:
14	chr17:59432319..59434797-chr20:46130586..46133009,2	MCF-7	breast:
15	chr17:59432014..59432684-chr17:59471131..59471664,2	MCF-7	breast:
16	chr17:59427533..59432475-chr20:49376876..49382217,8	MCF-7	breast:
17	chr17:59432029..59432785-chr8:101921083..101921880,2	MCF-7	breast:
18	chr17:59431969..59432496-chr17:59466607..59467734,3	MCF-7	breast:
19	chr17:59432399..59434400-chr17:77809151..77811169,2	MCF-7	breast:
20	chr17:59431402..59433750-chr4:17578628..17580464,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000124243	Chromatin interaction
ENSG00000267280	Chromatin interaction
ENSG00000002549	Chromatin interaction
ENSG00000096968	Chromatin interaction
ENSG00000124151	Chromatin interaction
ENSG00000133316	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065939	chr17:59283350-59517730	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	331 gene(s)	inside rSNPs	diseases
2	nsv833505	chr17:59323466-59518007	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	326 gene(s)	inside rSNPs	diseases
3	nsv833506	chr17:59362377-59562984	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
4	esv3345677	chr17:59432187-59432457	Enhancers Weak transcription	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:59388800-59444200	Weak transcription	Primary T cells from cord blood	blood
2	chr17:59416200-59444800	Weak transcription	Stomach Smooth Muscle	stomach
3	chr17:59416600-59433600	Weak transcription	Hela-S3	cervix
4	chr17:59416800-59439200	Weak transcription	Psoas Muscle	Psoas
5	chr17:59423200-59433600	Weak transcription	Pancreas	Pancrea
6	chr17:59424400-59437800	Weak transcription	Adipose Nuclei	Adipose
7	chr17:59427600-59444000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr17:59427800-59450000	Weak transcription	Ovary	ovary
9	chr17:59428400-59434000	Enhancers	HepG2	liver
10	chr17:59428800-59434400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr17:59429400-59433600	Weak transcription	Aorta	Aorta
12	chr17:59429400-59446000	Weak transcription	Fetal Intestine Small	intestine
13	chr17:59429800-59433200	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr17:59429800-59433800	Weak transcription	Gastric	stomach
15	chr17:59430200-59432600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr17:59430400-59433600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr17:59430600-59432800	Weak transcription	A549	lung
18	chr17:59430600-59433600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr17:59430600-59433600	Weak transcription	NHLF	lung
20	chr17:59430600-59433800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr17:59430800-59433600	Weak transcription	NHDF-Ad	bronchial
22	chr17:59430800-59435200	Weak transcription	Right Ventricle	heart
23	chr17:59431000-59433600	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr17:59431000-59434000	Weak transcription	HSMMtube	muscle
25	chr17:59431000-59436200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr17:59431000-59436200	Weak transcription	Fetal Heart	heart
27	chr17:59431000-59436600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr17:59431000-59439200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr17:59431000-59439400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr17:59431200-59436400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr17:59431200-59446200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr17:59431200-59446200	Weak transcription	Lung	lung
33	chr17:59431400-59433800	Weak transcription	HSMM	muscle
34	chr17:59431600-59432600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr17:59431600-59432600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr17:59431600-59433600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr17:59431600-59433600	Weak transcription	NHEK	skin
38	chr17:59431600-59436200	Weak transcription	Fetal Lung	lung
39	chr17:59431600-59443800	Weak transcription	Spleen	Spleen
40	chr17:59431600-59445600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr17:59432000-59432600	Enhancers	ES-I3 Cell Line	embryonic stem cell
42	chr17:59432000-59433000	Enhancers	Fetal Stomach	stomach
43	chr17:59432000-59433600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr17:59432000-59433600	Weak transcription	Esophagus	oesophagus
45	chr17:59432000-59434200	Weak transcription	Fetal Muscle Trunk	muscle
46	chr17:59432000-59435400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr17:59432200-59436600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr17:59432400-59432600	Enhancers	HUES64 Cell Line	embryonic stem cell
49	chr17:59432400-59432600	Enhancers	iPS-20b Cell Line	embryonic stem cell
50	chr17:59432400-59433600	Weak transcription	Placenta	Placenta

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