Variant report

Variant	rs201342087
Chromosome Location	chr4:69960165-69960166
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:31 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999654	chr4:69661415-70132110	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	esv3420586	chr4:69680878-70322918	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
3	nsv1067773	chr4:69718248-70715727	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	esv3468151	chr4:69718675-70322776	Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
5	esv3468153	chr4:69718675-70322776	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
6	nsv594582	chr4:69827340-69988378	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv879379	chr4:69878929-69987249	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv594583	chr4:69928642-69988378	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv427683	chr4:69929701-70414172	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
10	nsv522091	chr4:69932587-69988378	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv999858	chr4:69933262-70676525	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
12	nsv1000261	chr4:69954600-70642254	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
13	nsv537134	chr4:69954600-70642254	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
14	esv2502619	chr4:69959402-69960860	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
15	esv5943	chr4:69959618-69960414	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
16	esv3354274	chr4:69959663-69960711	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
17	esv2027103	chr4:69959674-69960366	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
18	esv3465436	chr4:69959727-69960255	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
19	esv3503386	chr4:69959739-69960278	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
20	esv3503389	chr4:69959749-69960254	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
21	esv3503384	chr4:69959760-69960202	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
22	esv3465438	chr4:69959771-69960238	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
23	esv3465437	chr4:69959775-69960237	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
24	esv3465435	chr4:69959782-69960193	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
25	esv3503387	chr4:69959783-69960215	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
26	esv3451	chr4:69959798-69960310	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
27	esv3465439	chr4:69959826-69960173	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
28	esv3503388	chr4:69959842-69960167	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
29	esv3465440	chr4:69959842-69960173	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
30	esv3503390	chr4:69959842-69960173	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
31	esv2583599	chr4:69959848-69960171	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:69958000-69960800	Weak transcription	HUVEC	blood vessel
2	chr4:69958200-69961000	Weak transcription	HMEC	breast
3	chr4:69958400-69961800	Weak transcription	Osteobl	bone
4	chr4:69959200-69961000	Enhancers	A549	lung
5	chr4:69959400-69960400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr4:69959400-69960800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr4:69959600-69960400	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr4:69959600-69960800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr4:69959600-69960800	Weak transcription	Fetal Intestine Small	intestine
10	chr4:69959600-69960800	Weak transcription	NH-A	brain
11	chr4:69959600-69980000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr4:69959800-69960200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr4:69960000-69960400	Weak transcription	NHEK	skin
14	chr4:69960000-69962000	Enhancers	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links