Variant report

Variant	rs201388542
Chromosome Location	chr11:66083515-66083516
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:66056386..66058686-chr11:66082623..66084625,3	MCF-7	breast:
2	chr11:66083086..66084913-chr11:66102353..66104167,3	MCF-7	breast:
3	chr11:66082434..66085363-chr11:66203796..66205513,2	K562	blood:
4	chr11:65684297..65686517-chr11:66083132..66085712,2	MCF-7	breast:
5	chr11:66081995..66084304-chr11:66094378..66096695,2	MCF-7	breast:
6	chr11:66081234..66083776-chr11:66137430..66138945,2	MCF-7	breast:
7	chr11:66079398..66082242-chr11:66082522..66086120,5	K562	blood:

Variant related genes	Relation type
ENSG00000174851	Chromatin interaction
ENSG00000254458	Chromatin interaction
ENSG00000174547	Chromatin interaction
ENSG00000174791	Chromatin interaction
ENSG00000175573	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3335923	chr11:65741698-66175759	Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
2	esv3407551	chr11:65794503-66158322	Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
3	esv3392427	chr11:65981489-66273695	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	118 gene(s)	inside rSNPs	diseases
4	nsv897771	chr11:66011280-66362997	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	124 gene(s)	inside rSNPs	diseases
5	nsv897772	chr11:66018155-66254085	Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	118 gene(s)	inside rSNPs	diseases
6	nsv897780	chr11:66083129-66362997	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
7	esv3341472	chr11:66083401-66085949	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66079400-66083600	Active TSS	Psoas Muscle	Psoas
2	chr11:66079400-66085000	Active TSS	Fetal Kidney	kidney
3	chr11:66079400-66085000	Active TSS	Right Atrium	heart
4	chr11:66080400-66083600	Flanking Active TSS	Fetal Thymus	thymus
5	chr11:66080600-66084000	Weak transcription	Aorta	Aorta
6	chr11:66080600-66084400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr11:66080600-66084600	Flanking Active TSS	Adipose Nuclei	Adipose
8	chr11:66080800-66083600	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr11:66080800-66084000	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
10	chr11:66080800-66085000	Weak transcription	Liver	Liver
11	chr11:66080800-66085000	Weak transcription	Brain Substantia Nigra	brain
12	chr11:66080800-66085000	Weak transcription	HSMMtube	muscle
13	chr11:66081000-66083600	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr11:66081000-66084600	Weak transcription	Brain Angular Gyrus	brain
15	chr11:66081000-66084800	Weak transcription	HSMM	muscle
16	chr11:66081000-66085000	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr11:66081000-66085000	Active TSS	Left Ventricle	heart
18	chr11:66081000-66085200	Flanking Active TSS	Osteobl	bone
19	chr11:66081200-66083600	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr11:66081200-66084400	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr11:66081200-66084800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr11:66081200-66085000	Active TSS	Rectal Mucosa Donor 31	rectum
23	chr11:66081400-66084000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr11:66081400-66084000	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr11:66081400-66084200	Weak transcription	Fetal Heart	heart
26	chr11:66081400-66084200	Weak transcription	Small Intestine	intestine
27	chr11:66081400-66084800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr11:66081400-66084800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr11:66081400-66084800	Weak transcription	GM12878-XiMat	blood
30	chr11:66081400-66085000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr11:66081400-66085000	Enhancers	Primary T helper cells fromperipheralblood	blood
32	chr11:66081400-66085000	Weak transcription	A549	lung
33	chr11:66081600-66083600	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr11:66081600-66083800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr11:66081600-66083800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr11:66081600-66083800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr11:66081600-66083800	Weak transcription	Gastric	stomach
38	chr11:66081600-66083800	Weak transcription	Dnd41	blood
39	chr11:66081600-66084000	Active TSS	Duodenum Smooth Muscle	Duodenum
40	chr11:66081600-66084400	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr11:66081800-66083600	Transcr. at gene 5' and 3'	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr11:66081800-66083600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr11:66081800-66083600	Enhancers	Placenta Amnion	Placenta Amnion
44	chr11:66081800-66083600	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
45	chr11:66081800-66083800	Transcr. at gene 5' and 3'	Fetal Stomach	stomach
46	chr11:66081800-66084000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr11:66081800-66084000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr11:66081800-66084000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr11:66081800-66084600	Weak transcription	Primary B cells from peripheral blood	blood
50	chr11:66081800-66085000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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