Variant report

Variant	rs201442001
Chromosome Location	chr7:129394907-129394908
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:129394230..129396093-chr7:129414324..129416888,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000207691	Chromatin interaction
ENSG00000199158	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1813824	chr7:129379450-129424461	Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	364 gene(s)	inside rSNPs	diseases
2	esv14232	chr7:129379923-129445465	Flanking Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	365 gene(s)	inside rSNPs	diseases
3	nsv516024	chr7:129387380-129444951	Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	365 gene(s)	inside rSNPs	diseases
4	esv1817678	chr7:129394447-129424461	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	364 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129364200-129397600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr7:129366800-129399400	Weak transcription	Fetal Kidney	kidney
3	chr7:129369600-129399400	Weak transcription	Fetal Brain Male	brain
4	chr7:129372200-129397800	Weak transcription	NH-A	brain
5	chr7:129372400-129398800	Weak transcription	NHLF	lung
6	chr7:129375000-129395400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr7:129376600-129397200	Strong transcription	Dnd41	blood
8	chr7:129379800-129400400	Weak transcription	HSMM	muscle
9	chr7:129380000-129397000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr7:129380000-129406600	Weak transcription	HSMMtube	muscle
11	chr7:129380800-129397800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr7:129381800-129404200	Weak transcription	HepG2	liver
13	chr7:129381800-129415600	Weak transcription	Pancreas	Pancrea
14	chr7:129382000-129398400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr7:129382400-129395400	Weak transcription	Right Ventricle	heart
16	chr7:129382400-129395800	Weak transcription	Brain Hippocampus Middle	brain
17	chr7:129382400-129396200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr7:129382400-129408600	Weak transcription	Right Atrium	heart
19	chr7:129382400-129408800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr7:129382600-129407000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr7:129382800-129411400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr7:129383400-129395200	Weak transcription	Brain Angular Gyrus	brain
23	chr7:129383400-129395800	Weak transcription	Brain Anterior Caudate	brain
24	chr7:129383400-129398400	Weak transcription	Brain Substantia Nigra	brain
25	chr7:129383800-129396000	Weak transcription	HUVEC	blood vessel
26	chr7:129383800-129401000	Weak transcription	Osteobl	bone
27	chr7:129385400-129399200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr7:129385600-129395600	Weak transcription	Psoas Muscle	Psoas
29	chr7:129386400-129397200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr7:129387200-129398400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr7:129387400-129395200	Weak transcription	Placenta	Placenta
32	chr7:129387600-129399200	Weak transcription	Fetal Lung	lung
33	chr7:129387800-129398200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr7:129388600-129399000	Strong transcription	Fetal Stomach	stomach
35	chr7:129389000-129395800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr7:129389600-129396600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr7:129390000-129396000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr7:129390600-129397400	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr7:129391000-129398000	Weak transcription	GM12878-XiMat	blood
40	chr7:129391200-129395400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr7:129391600-129395400	Weak transcription	Primary B cells from cord blood	blood
42	chr7:129391600-129395400	Weak transcription	Fetal Brain Female	brain
43	chr7:129391800-129395400	Weak transcription	Primary hematopoietic stem cells	blood
44	chr7:129391800-129395600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr7:129392000-129395600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr7:129392000-129400000	Weak transcription	Brain Cingulate Gyrus	brain
47	chr7:129392200-129395400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr7:129392200-129395600	Weak transcription	Fetal Heart	heart
49	chr7:129392200-129404000	Weak transcription	K562	blood
50	chr7:129392400-129397200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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