Variant report

Variant	rs201454279
Chromosome Location	chr21:16589525-16589526
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr21:16249191..16252092-chr21:16587437..16590052,2	MCF-7	breast:
2	chr21:16586904..16589804-chr21:16590773..16592275,2	K562	blood:
3	chr21:16421751..16443998-chr21:16557859..16589610,273	MCF-7	breast:

Variant related genes	Relation type
ENSG00000180530	Chromatin interaction
ENSG00000236471	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:26 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063385	chr21:16521617-16926212	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv913413	chr21:16537728-16621859	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3454967	chr21:16586481-16591979	Enhancers Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv32772	chr21:16587490-16592163	Weak transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv3454965	chr21:16587606-16591454	Enhancers Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv3454968	chr21:16588025-16591737	Enhancers Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv3454962	chr21:16588244-16591556	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv819831	chr21:16588272-16591913	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv3454961	chr21:16588300-16591525	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv3454966	chr21:16588309-16591546	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	esv3454963	chr21:16588314-16591477	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	esv3327555	chr21:16588340-16591472	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	nsv820919	chr21:16588354-16590049	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	nsv828822	chr21:16588354-16590049	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	nsv828823	chr21:16588354-16591163	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
16	esv992011	chr21:16588378-16591451	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
17	nsv498975	chr21:16588378-16591455	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
18	esv3454969	chr21:16588379-16591455	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
19	esv1006098	chr21:16588380-16591452	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
20	esv1711394	chr21:16588380-16591454	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
21	esv19380	chr21:16588393-16589894	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
22	esv16351	chr21:16588393-16591163	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
23	esv1837138	chr21:16588414-16593184	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
24	nsv587059	chr21:16588414-16600408	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
25	nsv514948	chr21:16588429-16589908	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
26	nsv828824	chr21:16588560-16590049	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16585400-16592000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr21:16585600-16591400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr21:16586000-16591400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr21:16586400-16592400	Weak transcription	Liver	Liver
5	chr21:16588600-16591400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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