Variant report

Variant	rs201460735
Chromosome Location	chr5:128302174-128302175
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:128301330..128303294-chr5:128429299..128431386,3	K562	blood:
2	chr5:128299750..128303179-chr5:128428591..128431385,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000066583	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882839	chr5:128205828-128390167	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv882840	chr5:128205828-128428962	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830485	chr5:128298622-128480492	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
4	nsv819884	chr5:128301059-128303254	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv882841	chr5:128301971-128400356	Flanking Bivalent TSS/Enh Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv882842	chr5:128301971-128552706	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:128300400-128302200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
2	chr5:128300400-128302200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
3	chr5:128300400-128302200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
4	chr5:128300400-128302200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
5	chr5:128300600-128302200	Active TSS	Placenta Amnion	Placenta Amnion
6	chr5:128300600-128302400	Active TSS	Ovary	ovary
7	chr5:128300600-128303000	Active TSS	Left Ventricle	heart
8	chr5:128300600-128303200	Active TSS	Breast Myoepithelial Primary Cells	Breast
9	chr5:128300600-128303200	Active TSS	Right Atrium	heart
10	chr5:128300600-128303600	Active TSS	Right Ventricle	heart
11	chr5:128300800-128302200	Active TSS	Rectal Mucosa Donor 31	rectum
12	chr5:128301400-128302400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr5:128301400-128302600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr5:128301600-128302200	Bivalent/Poised TSS	Brain Anterior Caudate	brain
15	chr5:128301600-128302200	Flanking Bivalent TSS/Enh	HMEC	breast
16	chr5:128301600-128302200	Flanking Bivalent TSS/Enh	NHEK	skin
17	chr5:128301600-128303200	ZNF genes & repeats	Fetal Heart	heart
18	chr5:128301800-128302200	Enhancers	Placenta	Placenta
19	chr5:128302000-128302200	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
20	chr5:128302000-128302200	Flanking Active TSS	Esophagus	oesophagus
21	chr5:128302000-128303000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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