Variant report

Variant	rs201476125
Chromosome Location	chr6:160640151-160640152
allele	-/CAT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:160640093-160640173	A549	lung:	n/a	n/a
2	SUZ12	chr6:160639880-160640288	H1-hESC	embryonic stem cell:	n/a	n/a
3	USF2	chr6:160639904-160640195	HepG2	liver:	n/a	n/a
4	ZNF143	chr6:160639905-160640254	H1-hESC	embryonic stem cell:	n/a	n/a
5	POLR2A	chr6:160639832-160640286	H1-neurons	neurons:	n/a	n/a

Variant related genes	Relation type
SLC22A2	TF binding region

Extended variants
information (count: 16 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758089	chr6:160372244-161234665	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	esv2759484	chr6:160372244-161234665	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	esv35098	chr6:160422589-161070870	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	esv2757197	chr6:160432331-161070870	Weak transcription Genic enhancers Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv818463	chr6:160435569-161025547	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
6	nsv1030746	chr6:160592321-160867031	Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv538493	chr6:160592321-160867031	Weak transcription Bivalent/Poised TSS Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv886808	chr6:160625978-160652929	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	esv3450251	chr6:160639590-160640178	ZNF genes & repeats Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh	TF binding region	1 gene(s)	inside rSNPs	diseases
10	esv3381260	chr6:160639733-160640373	Weak transcription Bivalent Enhancer ZNF genes & repeats Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region	1 gene(s)	inside rSNPs	diseases
11	esv3386264	chr6:160639845-160640178	ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
12	esv3335287	chr6:160639998-160640292	Weak transcription Bivalent/Poised TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region	1 gene(s)	inside rSNPs	diseases
13	esv3363891	chr6:160640060-160640405	ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region	1 gene(s)	inside rSNPs	diseases
14	esv3411449	chr6:160640080-160640317	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region	1 gene(s)	inside rSNPs	diseases
15	esv3349860	chr6:160640118-160640337	Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
16	esv2433457	chr6:160640131-160640331	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:160637400-160642200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr6:160637400-160642800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr6:160639400-160640600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
4	chr6:160639600-160640200	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:160639600-160640200	ZNF genes & repeats	Lung	lung
6	chr6:160639800-160640200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:160639800-160640200	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
8	chr6:160639800-160640200	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr6:160639800-160640200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:160639800-160640200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:160639800-160640200	Enhancers	Colon Smooth Muscle	Colon
12	chr6:160639800-160640200	ZNF genes & repeats	Fetal Kidney	kidney
13	chr6:160639800-160640200	ZNF genes & repeats	Gastric	stomach
14	chr6:160639800-160640200	Bivalent Enhancer	Left Ventricle	heart
15	chr6:160639800-160640200	ZNF genes & repeats	Pancreas	Pancrea
16	chr6:160639800-160640200	Enhancers	Rectal Smooth Muscle	rectum
17	chr6:160639800-160640200	Bivalent Enhancer	Right Ventricle	heart
18	chr6:160639800-160640200	ZNF genes & repeats	Spleen	Spleen
19	chr6:160639800-160640400	ZNF genes & repeats	Stomach Smooth Muscle	stomach
20	chr6:160639800-160640800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
21	chr6:160640000-160640200	Flanking Bivalent TSS/Enh	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr6:160640000-160640200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr6:160640000-160640200	Bivalent/Poised TSS	Adipose Nuclei	Adipose
24	chr6:160640000-160640200	Bivalent/Poised TSS	Brain Anterior Caudate	brain
25	chr6:160640000-160640200	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
26	chr6:160640000-160640200	ZNF genes & repeats	Brain Substantia Nigra	brain
27	chr6:160640000-160640200	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
28	chr6:160640000-160640200	Bivalent/Poised TSS	Fetal Brain Male	brain
29	chr6:160640000-160640200	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
30	chr6:160640000-160640400	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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