Variant report

Variant	rs201487972
Chromosome Location	chr15:39006522-39006523
allele	-/TCTCC
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949171	chr15:38232548-39033746	Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1046994	chr15:38806163-39239014	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv525770	chr15:38816833-39084956	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv1054651	chr15:38827825-39082844	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv542358	chr15:38827825-39082844	Bivalent/Poised TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	esv990867	chr15:39006356-39007352	Flanking Active TSS Enhancers Weak transcription Strong transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:39001200-39006600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr15:39001200-39006600	Weak transcription	Colon Smooth Muscle	Colon
3	chr15:39001200-39006600	Weak transcription	Stomach Smooth Muscle	stomach
4	chr15:39001200-39006800	Weak transcription	Fetal Brain Male	brain
5	chr15:39005600-39008400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr15:39005600-39008400	Enhancers	HMEC	breast
7	chr15:39005600-39008600	Enhancers	HSMM	muscle
8	chr15:39005600-39008800	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr15:39005800-39006600	Enhancers	NHLF	lung
10	chr15:39005800-39006600	Enhancers	Osteobl	bone
11	chr15:39005800-39007200	Enhancers	NHDF-Ad	bronchial
12	chr15:39005800-39008000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr15:39005800-39008400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr15:39006000-39007000	Enhancers	HSMMtube	muscle
15	chr15:39006000-39007200	Enhancers	HUVEC	blood vessel
16	chr15:39006000-39007400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr15:39006000-39007800	Enhancers	Muscle Satellite Cultured Cells	--
18	chr15:39006000-39008000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr15:39006200-39006600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr15:39006400-39007200	Enhancers	Rectal Smooth Muscle	rectum
21	chr15:39006400-39007200	Flanking Active TSS	NH-A	brain
22	chr15:39006400-39007600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr15:39006400-39008000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr15:39006400-39008000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr15:39006400-39009000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr15:39006400-39025000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links