Variant report

Variant	rs201509377
Chromosome Location	chr3:105138031-105138032
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525071	chr3:105004853-105409321	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv829650	chr3:105070893-105255036	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv877304	chr3:105122214-105198374	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
4	nsv965389	chr3:105136702-105141255	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	esv2485509	chr3:105138031-105138031	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
6	nsv235075	chr3:105138031-105138031	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
7	esv2234433	chr3:105138031-105138032	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
8	esv1168345	chr3:105138031-105138032	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
9	nsv238496	chr3:105138032-105138032	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105134400-105141400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr3:105134400-105145400	Weak transcription	Brain Angular Gyrus	brain
3	chr3:105135000-105141400	Weak transcription	Brain Anterior Caudate	brain
4	chr3:105135000-105145800	Weak transcription	Brain Substantia Nigra	brain
5	chr3:105135200-105152000	Weak transcription	NH-A	brain
6	chr3:105135600-105139400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr3:105137200-105141000	Weak transcription	Osteobl	bone
8	chr3:105137200-105145400	Weak transcription	Brain Hippocampus Middle	brain
9	chr3:105137200-105147400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr3:105137200-105149400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr3:105137400-105138200	Weak transcription	Primary hematopoietic stem cells	blood
12	chr3:105137400-105141400	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr3:105137400-105143400	Weak transcription	A549	lung
14	chr3:105137400-105149200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr3:105137400-105178600	Weak transcription	Primary B cells from cord blood	blood
16	chr3:105137600-105139400	Enhancers	Pancreatic Islets	Pancreatic Islet
17	chr3:105137600-105143400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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