Variant report

Variant	rs2015325
Chromosome Location	chr9:94140402-94140403
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1106012	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1615811	0.88[ASN][1000 genomes]
rs1972090	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1995933	0.91[ASN][1000 genomes]
rs2457715	0.94[ASN][1000 genomes]
rs298723	0.88[ASN][1000 genomes]
rs4744042	0.91[ASN][1000 genomes]
rs774223	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs894962	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893570	chr9:93973938-94148084	Enhancers Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv482877	chr9:93979351-94157734	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv893571	chr9:94072113-94202927	Genic enhancers Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv824980	chr9:94131502-94215911	Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94137800-94140600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr9:94137800-94140600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr9:94137800-94140800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr9:94137800-94140800	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr9:94137800-94140800	Weak transcription	NH-A	brain
6	chr9:94137800-94140800	Weak transcription	Osteobl	bone
7	chr9:94138800-94140800	Weak transcription	NHDF-Ad	bronchial
8	chr9:94138800-94145200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr9:94139800-94142000	Enhancers	HUVEC	blood vessel
10	chr9:94140200-94142000	Enhancers	Placenta	Placenta

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links