Variant report

Variant	rs201557698
Chromosome Location	chr5:96496840-96496841
allele	-/TA
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:96496426..96497975-chr5:96509660..96511880,2	K562	blood:
2	chr5:96496779..96498459-chr5:96502787..96504322,2	K562	blood:

Variant related genes	Relation type
ENSG00000206698	Chromatin interaction
ENSG00000058729	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432755	chr5:95987984-96657483	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv598962	chr5:96057891-96893164	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv830412	chr5:96427305-96606619	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv830413	chr5:96450582-96509294	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv1019790	chr5:96471680-96980633	Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
6	nsv537812	chr5:96471680-96980633	ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
7	nsv882391	chr5:96496189-96533469	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
8	nsv882392	chr5:96496189-96546238	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
9	nsv882393	chr5:96496189-96567950	Flanking Bivalent TSS/Enh Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
10	esv3402204	chr5:96496791-96497143	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:96478400-96507800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:96492200-96498000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr5:96492200-96510200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr5:96493600-96498200	Strong transcription	Primary B cells from cord blood	blood
5	chr5:96493600-96501600	Weak transcription	NHLF	lung
6	chr5:96493800-96497800	Weak transcription	HUVEC	blood vessel
7	chr5:96494000-96502800	Weak transcription	Psoas Muscle	Psoas
8	chr5:96494200-96497400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr5:96494200-96497800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr5:96494200-96498000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr5:96494200-96498000	Weak transcription	Fetal Kidney	kidney
12	chr5:96494200-96499200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr5:96494200-96499600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr5:96494200-96501000	Strong transcription	Rectal Mucosa Donor 29	rectum
15	chr5:96494200-96501400	Weak transcription	Brain Anterior Caudate	brain
16	chr5:96494200-96503000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr5:96494200-96506600	Weak transcription	Ovary	ovary
18	chr5:96494400-96497400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr5:96494400-96497800	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr5:96494400-96498000	Weak transcription	Adipose Nuclei	Adipose
21	chr5:96494400-96499600	Weak transcription	Esophagus	oesophagus
22	chr5:96494400-96501400	Strong transcription	Liver	Liver
23	chr5:96494400-96501800	Strong transcription	Primary B cells from peripheral blood	blood
24	chr5:96494400-96502800	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr5:96494400-96503200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr5:96494400-96505200	Weak transcription	Fetal Brain Male	brain
27	chr5:96494400-96510600	Weak transcription	Gastric	stomach
28	chr5:96494400-96515200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr5:96494400-96518000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr5:96494600-96497000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr5:96494600-96497000	Strong transcription	Brain Hippocampus Middle	brain
32	chr5:96494600-96497000	Strong transcription	Brain Inferior Temporal Lobe	brain
33	chr5:96494600-96497800	Weak transcription	Primary neutrophils fromperipheralblood	blood
34	chr5:96494600-96498800	Weak transcription	Left Ventricle	heart
35	chr5:96494600-96499200	Strong transcription	Fetal Intestine Large	intestine
36	chr5:96494600-96500800	Strong transcription	Skeletal Muscle Female	skeletal muscle
37	chr5:96494600-96500800	Strong transcription	HSMM	muscle
38	chr5:96494600-96501000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr5:96494600-96502800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr5:96494600-96502800	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr5:96494600-96505200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
42	chr5:96494600-96516600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr5:96494800-96497200	Strong transcription	Rectal Mucosa Donor 31	rectum
44	chr5:96494800-96500400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr5:96494800-96502600	Strong transcription	Primary T cells fromperipheralblood	blood
46	chr5:96494800-96514400	Weak transcription	Fetal Heart	heart
47	chr5:96494800-96515200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr5:96494800-96516400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
49	chr5:96494800-96516400	Strong transcription	Fetal Muscle Trunk	muscle
50	chr5:96494800-96516400	Strong transcription	Fetal Thymus	thymus

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