Variant report

Variant	rs2015605
Chromosome Location	chr9:110015047-110015048
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:110013982..110015486-chr9:110023325..110025849,2	K562	blood:
2	chr9:110009648..110012591-chr9:110013011..110015349,2	K562	blood:
3	chr9:110014211..110018622-chr9:110040932..110043716,4	MCF-7	breast:
4	chr9:110009341..110011173-chr9:110013824..110016663,3	MCF-7	breast:
5	chr9:110011669..110017049-chr9:110043880..110047775,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000119318	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10739232	0.82[ASN][1000 genomes]
rs10759219	0.82[ASN][1000 genomes]
rs10759220	0.82[ASN][1000 genomes]
rs10759221	0.82[ASN][1000 genomes]
rs10978766	0.82[ASN][1000 genomes]
rs10978770	0.82[ASN][1000 genomes]
rs1535766	0.82[ASN][1000 genomes]
rs1535767	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7852259	0.82[ASN][1000 genomes]
rs7852295	0.82[ASN][1000 genomes]
rs7866312	0.82[ASN][1000 genomes]
rs7866353	0.82[ASN][1000 genomes]
rs7866797	0.82[ASN][1000 genomes]
rs7867706	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869351	chr9:109593212-110191170	Active TSS Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv831682	chr9:109937181-110075453	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv893698	chr9:109998563-110052660	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv508560	chr9:110006490-110060539	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110007000-110022600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:110009800-110015400	Enhancers	Fetal Muscle Leg	muscle
3	chr9:110012400-110022600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr9:110013400-110015400	Enhancers	Placenta	Placenta
5	chr9:110013600-110015400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr9:110014600-110015200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr9:110014600-110015400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr9:110014600-110015400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr9:110014600-110015400	Enhancers	Placenta Amnion	Placenta Amnion
10	chr9:110014600-110016400	Enhancers	HepG2	liver
11	chr9:110014600-110016600	Weak transcription	Aorta	Aorta
12	chr9:110014600-110016600	Weak transcription	Ovary	ovary
13	chr9:110014600-110017000	Enhancers	Fetal Heart	heart
14	chr9:110014800-110015200	Enhancers	Osteobl	bone
15	chr9:110014800-110015400	Enhancers	NHLF	lung
16	chr9:110014800-110015600	Active TSS	Skeletal Muscle Female	skeletal muscle
17	chr9:110014800-110016000	Enhancers	NHDF-Ad	bronchial
18	chr9:110014800-110017600	Weak transcription	Pancreas	Pancrea
19	chr9:110014800-110021400	Weak transcription	Adipose Nuclei	Adipose
20	chr9:110014800-110022800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr9:110015000-110015200	Active TSS	HSMMtube	muscle
22	chr9:110015000-110016400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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