Variant report

Variant	rs201573384
Chromosome Location	chr2:112896249-112896250
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874863	chr2:112591224-113157344	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv874864	chr2:112617280-113104142	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv874865	chr2:112623098-113049274	Enhancers Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
4	nsv1013218	chr2:112645633-112908416	Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	nsv1014787	chr2:112679182-112908416	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
6	nsv535893	chr2:112679182-112908416	Strong transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
7	esv3422414	chr2:112883450-113200285	Strong transcription Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
8	esv14942	chr2:112895791-112898036	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:112895200-112896600	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
2	chr2:112895200-112897000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr2:112895200-112898200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr2:112895400-112896400	Bivalent/Poised TSS	Primary mononuclear cells fromperipheralblood	Blood
5	chr2:112895400-112896400	Active TSS	Aorta	Aorta
6	chr2:112895400-112896400	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
7	chr2:112895400-112896600	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr2:112895400-112896600	Active TSS	Brain Anterior Caudate	brain
9	chr2:112895400-112896600	Active TSS	Right Atrium	heart
10	chr2:112895400-112896600	Active TSS	HSMM	muscle
11	chr2:112895400-112897000	Active TSS	Pancreatic Islets	Pancreatic Islet
12	chr2:112895400-112898600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
13	chr2:112895400-112898600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
14	chr2:112895600-112896400	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
15	chr2:112895600-112896400	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
16	chr2:112895600-112896400	Active TSS	Fetal Kidney	kidney
17	chr2:112895600-112896400	Active TSS	Placenta Amnion	Placenta Amnion
18	chr2:112895600-112896400	Bivalent/Poised TSS	HSMMtube	muscle
19	chr2:112895600-112896600	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr2:112895600-112896600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr2:112895600-112896600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr2:112895600-112896800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
23	chr2:112895600-112896800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr2:112895600-112896800	Active TSS	Psoas Muscle	Psoas
25	chr2:112895600-112898600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
26	chr2:112895600-112898600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr2:112895600-112898800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
28	chr2:112895800-112896400	Active TSS	Primary T cells from cord blood	blood
29	chr2:112895800-112896400	Active TSS	Brain Cingulate Gyrus	brain
30	chr2:112895800-112896400	Active TSS	Duodenum Mucosa	Duodenum
31	chr2:112895800-112896400	Bivalent/Poised TSS	Fetal Lung	lung
32	chr2:112895800-112896400	Active TSS	Gastric	stomach
33	chr2:112895800-112896400	Active TSS	Ovary	ovary
34	chr2:112895800-112896400	Active TSS	Rectal Mucosa Donor 29	rectum
35	chr2:112895800-112896600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr2:112895800-112896600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
37	chr2:112895800-112896600	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr2:112895800-112896600	Active TSS	Brain Hippocampus Middle	brain
39	chr2:112895800-112896600	Active TSS	Brain Inferior Temporal Lobe	brain
40	chr2:112895800-112896600	Bivalent/Poised TSS	Fetal Intestine Large	intestine
41	chr2:112895800-112896800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr2:112895800-112896800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr2:112895800-112896800	Active TSS	Brain Angular Gyrus	brain
44	chr2:112895800-112896800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
45	chr2:112895800-112896800	Active TSS	Brain Substantia Nigra	brain
46	chr2:112895800-112896800	Active TSS	Esophagus	oesophagus
47	chr2:112895800-112896800	Bivalent/Poised TSS	Fetal Intestine Small	intestine
48	chr2:112895800-112896800	Active TSS	Pancreas	Pancrea
49	chr2:112895800-112896800	Active TSS	A549	lung
50	chr2:112895800-112896800	Active TSS	HepG2	liver

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