Variant report

Variant	rs201591841
Chromosome Location	chr1:149811599-149811600
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZBTB33	chr1:149811579-149815152	GM12878	blood:	n/a	n/a
2	POLR2A	chr1:149810641-149815102	U87	brain:	n/a	n/a
3	POLR2A	chr1:149808894-149816026	SK-N-SH	brain:	n/a	n/a
4	NR2F2	chr1:149810817-149811864	K562	blood:	n/a	n/a
5	POLR2A	chr1:149811229-149814998	MCF-7	breast:	n/a	n/a
6	POLR2A	chr1:149800421-149817942	H1-hESC	embryonic stem cell:	n/a	n/a
7	POLR2A	chr1:149810562-149815035	GM12891	blood:	n/a	n/a
8	POLR2A	chr1:149807697-149816065	Hela-S3	cervix:	n/a	n/a
9	POLR2A	chr1:149811240-149815032	HepG2	liver:	n/a	n/a
10	POU2F2	chr1:149810659-149815111	GM12891	blood:	n/a	chr1:149814438-149814448 chr1:149814438-149814448 chr1:149814439-149814450 chr1:149814436-149814451 chr1:149814439-149814449 chr1:149814433-149814455
11	POLR2A	chr1:149810882-149815663	U87	brain:	n/a	n/a
12	POLR2A	chr1:149808691-149815499	H1-hESC	embryonic stem cell:	n/a	n/a
13	TEAD4	chr1:149811432-149812127	H1-hESC	embryonic stem cell:	n/a	n/a
14	POLR2A	chr1:149809471-149815854	PANC-1	pancreas:	n/a	n/a
15	EP300	chr1:149811568-149811816	GM12878	blood:	n/a	n/a
16	PAX5	chr1:149811280-149815051	GM12878	blood:	n/a	chr1:149814982-149814992 chr1:149813455-149813464
17	GATA2	chr1:149810492-149815139	K562	blood:	n/a	chr1:149810891-149810899 chr1:149813300-149813307
18	POLR2A	chr1:149810739-149815077	SK-N-SH	brain:	n/a	n/a
19	POLR2A	chr1:149810662-149815719	SK-N-MC	brain:	n/a	n/a
20	BCL11A	chr1:149811161-149812177	GM12878	blood:	n/a	n/a
21	HEY1	chr1:149807768-149815109	K562	blood:	n/a	chr1:149812873-149812882 chr1:149812875-149812884
22	POLR2A	chr1:149810702-149815617	GM12891	blood:	n/a	n/a
23	ZBTB33	chr1:149811097-149815029	K562	blood:	n/a	n/a
24	EP300	chr1:149811443-149815069	GM12878	blood:	n/a	chr1:149813275-149813289 chr1:149813281-149813295
25	POLR2A	chr1:149811354-149814913	SK-N-MC	brain:	n/a	n/a
26	POLR2A	chr1:149811224-149815063	A549	lung:	n/a	n/a
27	POLR2A	chr1:149810673-149815443	GM12891	blood:	n/a	n/a
28	SIN3AK20	chr1:149810881-149815194	SK-N-SH	brain:	n/a	n/a
29	NFIC	chr1:149811025-149815171	GM12878	blood:	n/a	n/a
30	POLR2A	chr1:149811598-149814810	A549	lung:	n/a	n/a
31	POLR2A	chr1:149808886-149815713	GM12892	blood:	n/a	n/a
32	POLR2A	chr1:149811156-149815403	HepG2	liver:	n/a	n/a
33	POLR2A	chr1:149810996-149814994	HepG2	liver:	n/a	n/a
34	CEBPB	chr1:149811007-149811954	GM12878	blood:	n/a	n/a
35	POU2F2	chr1:149811429-149814718	GM12878	blood:	n/a	chr1:149814438-149814448 chr1:149814438-149814448 chr1:149814439-149814450 chr1:149814436-149814451 chr1:149814439-149814449 chr1:149814433-149814455
36	SIN3AK20	chr1:149811379-149814969	A549	lung:	n/a	n/a
37	FOSL2	chr1:149811562-149815100	HepG2	liver:	n/a	chr1:149814377-149814386 chr1:149812874-149812883
38	POLR2A	chr1:149809847-149815537	GM12892	blood:	n/a	n/a
39	POLR2A	chr1:149810567-149815116	GM12878	blood:	n/a	n/a
40	PBX3	chr1:149811265-149814407	GM12878	blood:	n/a	chr1:149814378-149814387
41	POLR2A	chr1:149811220-149815079	HepG2	liver:	n/a	n/a
42	TAF1	chr1:149811579-149814981	A549	lung:	n/a	n/a
43	SP1	chr1:149810738-149815353	A549	lung:	n/a	chr1:149813372-149813381 chr1:149814368-149814389 chr1:149812854-149812875 chr1:149813142-149813151 chr1:149813141-149813153 chr1:149813143-149813152 chr1:149814406-149814427 chr1:149813371-149813383 chr1:149813142-149813152 chr1:149812935-149812944 chr1:149813141-149813153 chr1:149813210-149813219
44	POLR2A	chr1:149811048-149815758	HepG2	liver:	n/a	n/a
45	PAX5	chr1:149811490-149812227	GM12878	blood:	n/a	n/a
46	POLR2A	chr1:149810502-149815486	GM12892	blood:	n/a	n/a
47	TAF1	chr1:149811590-149815116	HepG2	liver:	n/a	n/a
48	POLR2A	chr1:149810707-149815142	A549	lung:	n/a	n/a
49	TCF3	chr1:149811320-149815142	GM12878	blood:	n/a	chr1:149813560-149813570 chr1:149813562-149813575
50	POLR2A	chr1:149806720-149815687	Hela-S3	cervix:	n/a	n/a

Variant related genes	Relation type
HIST2H2BD	TF binding region

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432820	chr1:148921404-149920927	Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	784 gene(s)	inside rSNPs	diseases
2	nsv869912	chr1:148936712-149815117	Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	413 gene(s)	inside rSNPs	diseases
3	esv1806395	chr1:149015282-149849940	Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	425 gene(s)	inside rSNPs	diseases
4	esv1831586	chr1:149036382-149849940	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	425 gene(s)	inside rSNPs	diseases
5	nsv872384	chr1:149211496-149815536	Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	406 gene(s)	inside rSNPs	diseases
6	nsv824564	chr1:149581035-149815116	Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
7	nsv831503	chr1:149640643-149820841	Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
8	nsv469694	chr1:149688852-149836280	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
9	nsv482790	chr1:149688852-149836280	Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
10	nsv831525	chr1:149701537-149878033	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	424 gene(s)	inside rSNPs	diseases
11	nsv946379	chr1:149792977-149815416	Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
12	nsv547843	chr1:149798606-149818466	Weak transcription Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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