Variant report

Variant	rs201606533
Chromosome Location	chr3:87039785-87039786
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534036	chr3:86967129-87283600	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1000548	chr3:87034157-87331360	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	esv3340343	chr3:87038787-87041635	Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:87033000-87041000	Active TSS	Placenta	Placenta
2	chr3:87033800-87041200	Active TSS	HSMMtube	muscle
3	chr3:87034800-87040600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr3:87035400-87041000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr3:87035600-87040600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr3:87035800-87041200	Active TSS	Ovary	ovary
7	chr3:87035800-87041400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr3:87036200-87041000	Active TSS	Right Atrium	heart
9	chr3:87036800-87040600	Active TSS	NHLF	lung
10	chr3:87037000-87041000	Active TSS	Breast Myoepithelial Primary Cells	Breast
11	chr3:87037000-87041200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr3:87037200-87040600	Active TSS	Placenta Amnion	Placenta Amnion
13	chr3:87037200-87040800	Active TSS	HSMM	muscle
14	chr3:87037200-87041000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr3:87037400-87040600	Active TSS	Osteobl	bone
16	chr3:87037400-87040800	Active TSS	Muscle Satellite Cultured Cells	--
17	chr3:87037600-87040800	Active TSS	Cortex derived primary cultured neurospheres	brain
18	chr3:87037600-87040800	Active TSS	Hela-S3	cervix
19	chr3:87037600-87041200	Active TSS	Fetal Lung	lung
20	chr3:87038000-87041000	Active TSS	Aorta	Aorta
21	chr3:87038200-87039800	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr3:87038200-87041000	Active TSS	Colon Smooth Muscle	Colon
23	chr3:87038400-87039800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
24	chr3:87038400-87039800	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
25	chr3:87038400-87041000	Active TSS	Right Ventricle	heart
26	chr3:87038600-87039800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
27	chr3:87038600-87040600	Active TSS	NH-A	brain
28	chr3:87038600-87040800	Active TSS	A549	lung
29	chr3:87038600-87040800	Active TSS	NHDF-Ad	bronchial
30	chr3:87038600-87041000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr3:87038800-87039800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
32	chr3:87038800-87039800	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
33	chr3:87038800-87039800	Bivalent/Poised TSS	Rectal Mucosa Donor 31	rectum
34	chr3:87038800-87040600	Bivalent/Poised TSS	Fetal Muscle Leg	muscle
35	chr3:87039000-87039800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr3:87039000-87039800	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
37	chr3:87039000-87039800	Bivalent/Poised TSS	Fetal Kidney	kidney
38	chr3:87039000-87039800	Flanking Active TSS	HMEC	breast
39	chr3:87039000-87040600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr3:87039000-87041000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr3:87039000-87041000	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
42	chr3:87039200-87039800	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr3:87039200-87039800	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
44	chr3:87039200-87039800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr3:87039200-87039800	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
46	chr3:87039200-87039800	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
47	chr3:87039200-87039800	Flanking Bivalent TSS/Enh	HUVEC	blood vessel
48	chr3:87039200-87040000	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet
49	chr3:87039200-87040200	Bivalent/Poised TSS	Brain Germinal Matrix	brain
50	chr3:87039200-87040400	Bivalent/Poised TSS	Fetal Brain Female	brain

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