Variant report

Variant	rs201608454
Chromosome Location	chr2:99234588-99234589
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:99233497..99236198-chr2:99236599..99238658,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013941	chr2:99116255-99317933	Weak transcription Strong transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv535834	chr2:99116255-99317933	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	esv2585417	chr2:99233761-99235142	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:99225800-99235000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:99226600-99234600	Strong transcription	HUES48 Cell Line	embryonic stem cell
3	chr2:99226600-99235000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr2:99226600-99235800	Strong transcription	HSMM	muscle
5	chr2:99226800-99235200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
6	chr2:99226800-99235400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr2:99226800-99235600	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr2:99226800-99238600	Strong transcription	Primary B cells from cord blood	blood
9	chr2:99227000-99239000	Strong transcription	Primary neutrophils fromperipheralblood	blood
10	chr2:99227200-99234800	Strong transcription	Fetal Muscle Leg	muscle
11	chr2:99227200-99234800	Strong transcription	Ovary	ovary
12	chr2:99227200-99235400	Strong transcription	NH-A	brain
13	chr2:99227200-99236000	Strong transcription	Fetal Muscle Trunk	muscle
14	chr2:99227200-99236000	Strong transcription	Placenta	Placenta
15	chr2:99227200-99257400	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr2:99227400-99234600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr2:99227400-99234800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr2:99227400-99234800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr2:99227400-99234800	Strong transcription	Thymus	Thymus
20	chr2:99227400-99234800	Strong transcription	A549	lung
21	chr2:99227400-99234800	Strong transcription	HSMMtube	muscle
22	chr2:99227400-99235000	Strong transcription	Primary B cells from peripheral blood	blood
23	chr2:99227400-99235200	Strong transcription	Skeletal Muscle Male	skeletal muscle
24	chr2:99227400-99235400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr2:99227400-99235400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
26	chr2:99227400-99235600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr2:99227400-99235600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr2:99227400-99235800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr2:99227600-99235000	Strong transcription	Rectal Mucosa Donor 31	rectum
30	chr2:99227600-99235200	Strong transcription	Muscle Satellite Cultured Cells	--
31	chr2:99227600-99235200	Strong transcription	Osteobl	bone
32	chr2:99227600-99243200	Strong transcription	Primary monocytes fromperipheralblood	blood
33	chr2:99227800-99234600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr2:99227800-99234600	Strong transcription	Sigmoid Colon	Sigmoid Colon
35	chr2:99227800-99234800	Strong transcription	GM12878-XiMat	blood
36	chr2:99227800-99239400	Strong transcription	HUVEC	blood vessel
37	chr2:99227800-99240200	Strong transcription	Fetal Thymus	thymus
38	chr2:99228000-99234800	Strong transcription	K562	blood
39	chr2:99228000-99235400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr2:99228000-99235600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr2:99228000-99236000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr2:99228000-99236000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr2:99228000-99236000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr2:99228000-99236000	Strong transcription	Liver	Liver
45	chr2:99228000-99236400	Strong transcription	Cortex derived primary cultured neurospheres	brain
46	chr2:99228000-99238200	Strong transcription	Adipose Nuclei	Adipose
47	chr2:99228000-99239000	Strong transcription	Skeletal Muscle Female	skeletal muscle
48	chr2:99228000-99240000	Strong transcription	Dnd41	blood
49	chr2:99228000-99240400	Strong transcription	Duodenum Mucosa	Duodenum
50	chr2:99228000-99241200	Strong transcription	Rectal Mucosa Donor 29	rectum

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