Variant report

Variant	rs201612037
Chromosome Location	chr3:133748334-133748335
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:133683547..133684239-chr3:133747628..133748622,2	MCF-7	breast:
2	chr3:133646547..133649417-chr3:133747538..133750277,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000221972	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877509	chr3:133701960-133756102	Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	esv3426811	chr3:133747687-133750235	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133746200-133749200	Active TSS	Right Atrium	heart
2	chr3:133746400-133748400	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:133746600-133749200	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:133746800-133748400	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr3:133747000-133749000	Bivalent/Poised TSS	Colonic Mucosa	Colon
6	chr3:133747200-133748600	Flanking Active TSS	HUVEC	blood vessel
7	chr3:133747400-133748600	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
8	chr3:133747400-133748800	Active TSS	Gastric	stomach
9	chr3:133747600-133748400	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
10	chr3:133747600-133748400	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
11	chr3:133747600-133748400	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr3:133747600-133748400	Bivalent/Poised TSS	Primary T cells from cord blood	blood
13	chr3:133747600-133748400	Flanking Active TSS	Esophagus	oesophagus
14	chr3:133747600-133748400	Bivalent/Poised TSS	Fetal Kidney	kidney
15	chr3:133747600-133748400	Flanking Active TSS	Pancreas	Pancrea
16	chr3:133747600-133748600	Flanking Bivalent TSS/Enh	Placenta	Placenta
17	chr3:133747600-133749000	Bivalent/Poised TSS	Sigmoid Colon	Sigmoid Colon
18	chr3:133747800-133748400	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr3:133747800-133748400	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
20	chr3:133747800-133748400	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr3:133747800-133748400	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
22	chr3:133747800-133748400	Flanking Bivalent TSS/Enh	Fetal Intestine Large	intestine
23	chr3:133747800-133748400	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
24	chr3:133747800-133748400	Flanking Bivalent TSS/Enh	Fetal Thymus	thymus
25	chr3:133747800-133748400	Bivalent/Poised TSS	Left Ventricle	heart
26	chr3:133747800-133748400	Flanking Active TSS	Right Ventricle	heart
27	chr3:133747800-133748400	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
28	chr3:133747800-133748600	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
29	chr3:133747800-133748600	Flanking Bivalent TSS/Enh	HepG2	liver
30	chr3:133747800-133749200	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
31	chr3:133747800-133749400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
32	chr3:133747800-133749600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
33	chr3:133747800-133749800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
34	chr3:133748000-133748400	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr3:133748000-133748400	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr3:133748000-133748400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr3:133748000-133748400	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
38	chr3:133748000-133748400	Bivalent Enhancer	Primary B cells from peripheral blood	blood
39	chr3:133748000-133748400	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr3:133748000-133748400	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
41	chr3:133748000-133748400	Flanking Bivalent TSS/Enh	Colon Smooth Muscle	Colon
42	chr3:133748000-133748400	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
43	chr3:133748000-133748400	Flanking Active TSS	Fetal Heart	heart
44	chr3:133748000-133748400	Active TSS	Psoas Muscle	Psoas
45	chr3:133748000-133748400	Flanking Bivalent TSS/Enh	Rectal Mucosa Donor 31	rectum
46	chr3:133748000-133748400	Flanking Bivalent TSS/Enh	NH-A	brain
47	chr3:133748000-133748400	Flanking Bivalent TSS/Enh	NHEK	skin
48	chr3:133748000-133748600	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr3:133748000-133748600	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
50	chr3:133748000-133748600	Flanking Bivalent TSS/Enh	Brain Cingulate Gyrus	brain

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