Variant report

Variant	rs201714735
Chromosome Location	chr15:43237532-43237533
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:43234709..43237589-chr15:43247590..43250522,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050128	chr15:43056145-43262736	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv542368	chr15:43056145-43262736	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv525461	chr15:43062548-43482127	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
4	nsv904134	chr15:43097652-43357406	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1044522	chr15:43115348-43658417	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
6	nsv515876	chr15:43116906-43445305	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	nsv904135	chr15:43143998-43392075	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv1036512	chr15:43164906-43274531	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv569239	chr15:43201109-43392075	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	nsv569240	chr15:43201109-43445305	Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
11	nsv569241	chr15:43201109-43522922	Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
12	nsv1039587	chr15:43204351-43378274	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
13	nsv569242	chr15:43210030-43445305	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
14	nsv1050987	chr15:43237103-43385515	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
15	nsv542369	chr15:43237103-43385515	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:43223600-43238400	Weak transcription	Ovary	ovary
2	chr15:43225800-43247600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr15:43226000-43242200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr15:43228200-43242400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr15:43230200-43242400	Weak transcription	NHLF	lung
6	chr15:43230400-43237600	Weak transcription	Lung	lung
7	chr15:43230600-43238400	Weak transcription	Fetal Intestine Small	intestine
8	chr15:43231800-43242600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr15:43232000-43238200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr15:43232000-43362800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr15:43232400-43243400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr15:43232600-43242200	Weak transcription	Brain Anterior Caudate	brain
13	chr15:43234000-43242200	Weak transcription	Psoas Muscle	Psoas
14	chr15:43234000-43242400	Weak transcription	K562	blood
15	chr15:43234200-43241800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr15:43234200-43242400	Weak transcription	Brain Cingulate Gyrus	brain
17	chr15:43234200-43247600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr15:43234400-43239400	Strong transcription	Left Ventricle	heart
19	chr15:43234400-43242200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr15:43234400-43242200	Weak transcription	Rectal Smooth Muscle	rectum
21	chr15:43234600-43241800	Weak transcription	Brain Angular Gyrus	brain
22	chr15:43234600-43242400	Weak transcription	NHDF-Ad	bronchial
23	chr15:43234800-43238600	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr15:43234800-43239400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr15:43234800-43243400	Weak transcription	Gastric	stomach
26	chr15:43234800-43248400	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr15:43235000-43239200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr15:43235200-43238600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr15:43235200-43239400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr15:43235200-43239600	Strong transcription	Primary monocytes fromperipheralblood	blood
31	chr15:43235400-43237800	Strong transcription	NH-A	brain
32	chr15:43235400-43238200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr15:43235400-43238400	Strong transcription	Fetal Thymus	thymus
34	chr15:43235400-43239200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr15:43235400-43239200	Strong transcription	Primary B cells from cord blood	blood
36	chr15:43235400-43239400	Strong transcription	Primary hematopoietic stem cells	blood
37	chr15:43235400-43239400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
38	chr15:43235400-43239400	Strong transcription	Adipose Nuclei	Adipose
39	chr15:43235400-43239400	Strong transcription	Fetal Muscle Leg	muscle
40	chr15:43235400-43239400	Strong transcription	Sigmoid Colon	Sigmoid Colon
41	chr15:43235400-43239600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr15:43235400-43239600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr15:43235400-43239600	Strong transcription	Primary T cells from cord blood	blood
44	chr15:43235400-43239600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr15:43235400-43239600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr15:43235400-43239600	Strong transcription	Fetal Lung	lung
47	chr15:43235400-43252600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr15:43235600-43239200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr15:43235600-43239200	Strong transcription	Placenta	Placenta
50	chr15:43235600-43239400	Strong transcription	Primary neutrophils fromperipheralblood	blood

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