Variant report

Variant	rs201719643
Chromosome Location	chr5:79330783-79330784
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF143	chr5:79330761-79331391	H1-hESC	embryonic stem cell:	n/a	n/a
2	SIN3A	chr5:79330709-79331446	H1-hESC	embryonic stem cell:	n/a	chr5:79331146-79331157

Variant related genes	Relation type
THBS4	TF binding region
TRMT112P2	TF binding region

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432748	chr5:79300434-79577760	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv882219	chr5:79320677-79354147	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv882220	chr5:79321439-79335975	Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv882221	chr5:79321439-79350726	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Weak transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv882222	chr5:79321439-79354147	Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv598743	chr5:79329538-79335267	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
7	esv3423458	chr5:79330021-79332569	Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
8	esv3385040	chr5:79330296-79332294	Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
9	nsv882223	chr5:79330559-79357117	Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79330200-79332200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
2	chr5:79330400-79330800	Active TSS	Ovary	ovary
3	chr5:79330400-79331400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
4	chr5:79330400-79331600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
5	chr5:79330400-79331600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr5:79330400-79332000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
7	chr5:79330400-79332200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
8	chr5:79330600-79330800	Bivalent/Poised TSS	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr5:79330600-79330800	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr5:79330600-79330800	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
11	chr5:79330600-79330800	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
12	chr5:79330600-79330800	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
13	chr5:79330600-79330800	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
14	chr5:79330600-79330800	Bivalent Enhancer	Primary T killer memory cells from peripheral blood	blood
15	chr5:79330600-79330800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr5:79330600-79330800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr5:79330600-79330800	Bivalent Enhancer	Liver	Liver
18	chr5:79330600-79330800	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
19	chr5:79330600-79330800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
20	chr5:79330600-79330800	Flanking Bivalent TSS/Enh	Fetal Kidney	kidney
21	chr5:79330600-79330800	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
22	chr5:79330600-79330800	Bivalent Enhancer	Thymus	Thymus
23	chr5:79330600-79331000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells	blood
24	chr5:79330600-79331000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr5:79330600-79331000	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
26	chr5:79330600-79331000	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr5:79330600-79331000	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
28	chr5:79330600-79331000	Bivalent/Poised TSS	NHEK	skin
29	chr5:79330600-79331200	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
30	chr5:79330600-79331200	Bivalent/Poised TSS	Psoas Muscle	Psoas
31	chr5:79330600-79331200	Bivalent/Poised TSS	Right Ventricle	heart
32	chr5:79330600-79331400	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr5:79330600-79331400	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr5:79330600-79331400	Bivalent/Poised TSS	Fetal Brain Female	brain
35	chr5:79330600-79331600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
36	chr5:79330600-79331600	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
37	chr5:79330600-79331600	Bivalent/Poised TSS	Primary T cells from cord blood	blood
38	chr5:79330600-79331600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
39	chr5:79330600-79331600	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
40	chr5:79330600-79331600	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
41	chr5:79330600-79331600	Active TSS	Brain Anterior Caudate	brain
42	chr5:79330600-79331600	Bivalent Enhancer	Fetal Intestine Small	intestine
43	chr5:79330600-79331600	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
44	chr5:79330600-79331600	Active TSS	Right Atrium	heart
45	chr5:79330600-79331600	Bivalent/Poised TSS	NH-A	brain
46	chr5:79330600-79331800	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
47	chr5:79330600-79331800	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr5:79330600-79331800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
49	chr5:79330600-79331800	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
50	chr5:79330600-79331800	Bivalent/Poised TSS	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links