Variant report

Variant	rs201761967
Chromosome Location	chr6:118227552-118227553
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	esv3414441	chr6:118227509-118229957	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118226400-118227600	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr6:118226800-118228000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:118227200-118227600	Active TSS	Brain Anterior Caudate	brain
4	chr6:118227400-118227600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:118227400-118227600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
6	chr6:118227400-118227600	Active TSS	Brain Hippocampus Middle	brain
7	chr6:118227400-118227600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
8	chr6:118227400-118227800	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:118227400-118227800	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr6:118227400-118227800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
11	chr6:118227400-118228200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr6:118227400-118230200	Active TSS	Brain Angular Gyrus	brain
13	chr6:118227400-118230400	Active TSS	Brain Inferior Temporal Lobe	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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