Variant report

Variant	rs2018495
Chromosome Location	chr3:141380400-141380401
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr3:141380340-141380490	HBMEC	blood vessel:	n/a	n/a
2	CEBPB	chr3:141379875-141380708	HepG2	liver:	n/a	n/a
3	CEBPB	chr3:141379923-141380632	A549	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:141371342..141373237-chr3:141379412..141381256,2	MCF-7	breast:
2	chr3:141378869..141381397-chr3:141457213..141459259,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000242104	TF binding region

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs72996335	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs868767	0.81[AMR][1000 genomes]
rs868768	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141379600-141380800	Enhancers	Placenta	Placenta
2	chr3:141379600-141382200	Weak transcription	Spleen	Spleen
3	chr3:141379600-141382400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr3:141379600-141382800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr3:141379600-141382800	Weak transcription	HSMMtube	muscle
6	chr3:141379800-141380600	Bivalent Enhancer	HepG2	liver
7	chr3:141379800-141380800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr3:141379800-141380800	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr3:141379800-141380800	Enhancers	Ovary	ovary
10	chr3:141379800-141381000	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr3:141379800-141381400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr3:141379800-141382000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr3:141379800-141382200	Weak transcription	HSMM	muscle
14	chr3:141379800-141382400	Weak transcription	Fetal Lung	lung
15	chr3:141379800-141382600	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr3:141379800-141382800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr3:141379800-141382800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr3:141379800-141382800	Weak transcription	Adipose Nuclei	Adipose
19	chr3:141379800-141382800	Weak transcription	Pancreas	Pancrea
20	chr3:141380000-141382400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr3:141380200-141380600	Enhancers	Primary neutrophils fromperipheralblood	blood
22	chr3:141380200-141382800	Weak transcription	Colon Smooth Muscle	Colon

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