Variant report

Variant	rs2018595
Chromosome Location	chr2:191110648-191110649
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1440990	1.00[ASN][1000 genomes]
rs59924974	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3439178	chr2:190877215-191124499	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv875619	chr2:191062951-191112241	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv875620	chr2:191100723-191141593	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:191056800-191124600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr2:191056800-191131800	Weak transcription	NHEK	skin
3	chr2:191060800-191180000	Weak transcription	Small Intestine	intestine
4	chr2:191089000-191128800	Weak transcription	Gastric	stomach
5	chr2:191096800-191117400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr2:191098400-191114800	Weak transcription	HUVEC	blood vessel
7	chr2:191099400-191131800	Weak transcription	HMEC	breast
8	chr2:191100000-191122400	Weak transcription	Colonic Mucosa	Colon
9	chr2:191100000-191150400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr2:191100400-191128000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr2:191104400-191151000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr2:191105000-191180000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr2:191105800-191115200	Weak transcription	Psoas Muscle	Psoas
14	chr2:191106000-191117200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr2:191106200-191117200	Strong transcription	Liver	Liver
16	chr2:191106200-191117400	Strong transcription	Adipose Nuclei	Adipose
17	chr2:191106200-191132200	Weak transcription	Hela-S3	cervix
18	chr2:191106600-191111800	Strong transcription	Ovary	ovary
19	chr2:191106600-191113200	Strong transcription	Rectal Mucosa Donor 29	rectum
20	chr2:191106600-191117200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr2:191106600-191131800	Weak transcription	NHLF	lung
22	chr2:191106800-191111800	Strong transcription	Fetal Muscle Leg	muscle
23	chr2:191106800-191113800	Strong transcription	Primary B cells from peripheral blood	blood
24	chr2:191106800-191117200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr2:191106800-191118000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr2:191107000-191122400	Strong transcription	Primary B cells from cord blood	blood
27	chr2:191107400-191111600	Strong transcription	Fetal Intestine Large	intestine
28	chr2:191107400-191122800	Weak transcription	HSMMtube	muscle
29	chr2:191107400-191150600	Weak transcription	Rectal Smooth Muscle	rectum
30	chr2:191107600-191117200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr2:191107800-191125600	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr2:191108000-191110800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr2:191108000-191116000	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr2:191108000-191117000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr2:191108000-191129400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr2:191108200-191122400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr2:191108200-191129200	Weak transcription	Spleen	Spleen
38	chr2:191108200-191135400	Weak transcription	Right Ventricle	heart
39	chr2:191108200-191180000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr2:191108800-191113200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr2:191108800-191118200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr2:191108800-191124600	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr2:191109000-191122400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr2:191109200-191115200	Weak transcription	Fetal Heart	heart
45	chr2:191109200-191117000	Weak transcription	Primary neutrophils fromperipheralblood	blood
46	chr2:191109200-191119800	Weak transcription	Left Ventricle	heart
47	chr2:191109600-191111400	Weak transcription	Primary hematopoietic stem cells	blood
48	chr2:191109600-191112800	Weak transcription	Brain Hippocampus Middle	brain
49	chr2:191109600-191113000	Weak transcription	Aorta	Aorta
50	chr2:191109600-191113200	Weak transcription	Sigmoid Colon	Sigmoid Colon

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