Variant report

Variant	rs201861614
Chromosome Location	chr15:52603750-52603751
allele	-/AAAC
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:52602148..52604034-chr15:52608756..52610606,2	MCF-7	breast:
2	chr15:52597059..52600522-chr15:52602504..52605228,3	MCF-7	breast:
3	chr15:52590879..52593445-chr15:52599970..52603838,3	MCF-7	breast:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1846455	chr15:52501831-52714452	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv819139	chr15:52603664-52605766	Weak transcription Strong transcription	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52593600-52608600	Weak transcription	Fetal Brain Male	brain
2	chr15:52595200-52605600	Weak transcription	Duodenum Mucosa	Duodenum
3	chr15:52595400-52605600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr15:52595400-52610800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr15:52595400-52614200	Weak transcription	Fetal Lung	lung
6	chr15:52595600-52609800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr15:52595800-52628800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr15:52596000-52604800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr15:52596000-52605000	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr15:52596000-52605000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr15:52596000-52608400	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr15:52596000-52608800	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr15:52596000-52611000	Weak transcription	Fetal Stomach	stomach
14	chr15:52596200-52623600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr15:52596400-52605000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr15:52596400-52608600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr15:52597600-52608600	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr15:52597800-52629600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr15:52597800-52643400	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr15:52598400-52608400	Weak transcription	Brain Hippocampus Middle	brain
21	chr15:52598800-52604400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr15:52599000-52605200	Weak transcription	HMEC	breast
23	chr15:52599000-52605200	Weak transcription	NHEK	skin
24	chr15:52599200-52605000	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr15:52599200-52611000	Weak transcription	NHLF	lung
26	chr15:52599400-52611000	Weak transcription	Fetal Thymus	thymus
27	chr15:52599400-52611000	Weak transcription	Thymus	Thymus
28	chr15:52599600-52605400	Weak transcription	Brain Germinal Matrix	brain
29	chr15:52599800-52611000	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr15:52599800-52611000	Weak transcription	A549	lung
31	chr15:52600400-52607400	Weak transcription	Colon Smooth Muscle	Colon
32	chr15:52600400-52611200	Weak transcription	Colonic Mucosa	Colon
33	chr15:52600600-52611000	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr15:52600600-52624200	Weak transcription	Liver	Liver
35	chr15:52600800-52603800	Strong transcription	Primary T cells from cord blood	blood
36	chr15:52600800-52622800	Strong transcription	Primary T cells fromperipheralblood	blood
37	chr15:52600800-52646600	Strong transcription	Primary neutrophils fromperipheralblood	blood
38	chr15:52601000-52606800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr15:52601000-52608600	Weak transcription	Brain Anterior Caudate	brain
40	chr15:52601000-52610000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr15:52601000-52611000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr15:52601000-52622600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr15:52601000-52643400	Strong transcription	Primary monocytes fromperipheralblood	blood
44	chr15:52601200-52604200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr15:52601200-52604200	Strong transcription	Skeletal Muscle Male	skeletal muscle
46	chr15:52601200-52606400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
47	chr15:52601200-52611000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr15:52601200-52615200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr15:52601200-52622600	Strong transcription	Primary T helper cells fromperipheralblood	blood
50	chr15:52601400-52605400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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