Variant report

Variant	rs201864753
Chromosome Location	chr18:12449725-12449726
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:12431522..12433489-chr18:12448330..12450426,2	MCF-7	breast:
2	chr18:12448427..12450836-chr18:12453121..12454748,2	K562	blood:

Variant related genes	Relation type
ENSG00000256786	Chromatin interaction
ENSG00000267108	Chromatin interaction
ENSG00000134278	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063125	chr18:12046892-12918251	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	130 gene(s)	inside rSNPs	diseases
2	nsv491873	chr18:12159445-12739784	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
3	nsv909400	chr18:12201374-12585545	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
4	esv2758471	chr18:12240681-12499525	Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
5	esv2758714	chr18:12240681-12499525	Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
6	nsv576496	chr18:12247872-12490502	Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
7	nsv1060808	chr18:12302792-12514417	Genic enhancers Weak transcription Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
8	esv3528039	chr18:12396582-12851293	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
9	esv3528041	chr18:12396641-12851245	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
10	nsv978607	chr18:12449630-12451710	Weak transcription Strong transcription Genic enhancers	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:12420600-12477600	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr18:12421200-12452800	Weak transcription	Colonic Mucosa	Colon
3	chr18:12433200-12450200	Weak transcription	Thymus	Thymus
4	chr18:12433200-12464600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr18:12433400-12458600	Weak transcription	HepG2	liver
6	chr18:12434200-12477000	Weak transcription	Esophagus	oesophagus
7	chr18:12439400-12468200	Weak transcription	K562	blood
8	chr18:12441600-12452200	Weak transcription	Hela-S3	cervix
9	chr18:12442000-12459200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr18:12443200-12457400	Strong transcription	HSMM	muscle
11	chr18:12443600-12454600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr18:12444000-12460200	Weak transcription	Fetal Intestine Large	intestine
13	chr18:12444000-12467400	Weak transcription	A549	lung
14	chr18:12444200-12463200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr18:12444400-12453400	Weak transcription	Small Intestine	intestine
16	chr18:12444400-12458600	Weak transcription	Fetal Heart	heart
17	chr18:12444400-12465800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr18:12444600-12450200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr18:12444600-12455800	Weak transcription	Fetal Kidney	kidney
20	chr18:12444600-12457600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr18:12444600-12459400	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr18:12444600-12477600	Weak transcription	Rectal Smooth Muscle	rectum
23	chr18:12444800-12450400	Strong transcription	Fetal Muscle Trunk	muscle
24	chr18:12444800-12450800	Strong transcription	Fetal Brain Female	brain
25	chr18:12445000-12450000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr18:12445000-12454800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
27	chr18:12445600-12459200	Weak transcription	Fetal Intestine Small	intestine
28	chr18:12445600-12460800	Weak transcription	Primary hematopoietic stem cells	blood
29	chr18:12445800-12459000	Weak transcription	Placenta	Placenta
30	chr18:12446200-12479600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr18:12446600-12452000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr18:12446800-12450000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr18:12446800-12452800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr18:12446800-12455000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr18:12447000-12449800	Strong transcription	Brain Inferior Temporal Lobe	brain
36	chr18:12447000-12449800	Strong transcription	Left Ventricle	heart
37	chr18:12447000-12450400	Strong transcription	Stomach Smooth Muscle	stomach
38	chr18:12447000-12452800	Strong transcription	Brain Germinal Matrix	brain
39	chr18:12447000-12454600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr18:12447000-12454800	Strong transcription	Fetal Muscle Leg	muscle
41	chr18:12447000-12460800	Weak transcription	Duodenum Mucosa	Duodenum
42	chr18:12447200-12452400	Strong transcription	Skeletal Muscle Female	skeletal muscle
43	chr18:12447200-12453000	Strong transcription	HSMMtube	muscle
44	chr18:12447600-12450000	Strong transcription	NH-A	brain
45	chr18:12447800-12449800	Strong transcription	NHEK	skin
46	chr18:12447800-12454600	Weak transcription	Brain Substantia Nigra	brain
47	chr18:12447800-12459200	Weak transcription	Fetal Lung	lung
48	chr18:12447800-12461200	Weak transcription	Colon Smooth Muscle	Colon
49	chr18:12448000-12450000	Strong transcription	Brain Hippocampus Middle	brain
50	chr18:12448000-12463000	Weak transcription	Psoas Muscle	Psoas

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links