Variant report

Variant	rs201877044
Chromosome Location	chr10:98319180-98319181
allele	-/TTC
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:98318451-98319476	K562	blood:	n/a	n/a
2	POLR2A	chr10:98318539-98320031	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
NPM1P26	TF binding region

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv948151	chr10:98318755-98321287	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98274200-98328600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:98274200-98328600	Weak transcription	Pancreas	Pancrea
3	chr10:98274200-98331200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr10:98276400-98319800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr10:98276400-98343200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr10:98277800-98330400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr10:98286200-98323000	Weak transcription	Lung	lung
8	chr10:98286600-98338400	Weak transcription	Aorta	Aorta
9	chr10:98286600-98339400	Weak transcription	Brain Angular Gyrus	brain
10	chr10:98286600-98345600	Weak transcription	Esophagus	oesophagus
11	chr10:98290000-98344200	Weak transcription	Spleen	Spleen
12	chr10:98292600-98344800	Weak transcription	Brain Germinal Matrix	brain
13	chr10:98293600-98326200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr10:98295400-98320800	Weak transcription	Fetal Heart	heart
15	chr10:98296200-98320600	Strong transcription	Duodenum Mucosa	Duodenum
16	chr10:98297000-98329200	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr10:98297200-98325000	Strong transcription	Placenta	Placenta
18	chr10:98297800-98324800	Strong transcription	Dnd41	blood
19	chr10:98298200-98322400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr10:98298400-98324600	Strong transcription	Primary B cells from cord blood	blood
21	chr10:98298600-98324600	Strong transcription	Primary monocytes fromperipheralblood	blood
22	chr10:98298600-98325000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr10:98298600-98325200	Strong transcription	Primary B cells from peripheral blood	blood
24	chr10:98298800-98320000	Strong transcription	Rectal Mucosa Donor 31	rectum
25	chr10:98298800-98324200	Strong transcription	Fetal Thymus	thymus
26	chr10:98298800-98325600	Strong transcription	Primary T helper cells fromperipheralblood	blood
27	chr10:98299000-98325200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr10:98299400-98324200	Strong transcription	Primary T cells fromperipheralblood	blood
29	chr10:98300800-98322400	Strong transcription	HepG2	liver
30	chr10:98301200-98322600	Strong transcription	Primary T helper cells PMA-I stimulated	--
31	chr10:98304400-98325600	Weak transcription	NHLF	lung
32	chr10:98305400-98320400	Strong transcription	Fetal Intestine Large	intestine
33	chr10:98305400-98321600	Strong transcription	GM12878-XiMat	blood
34	chr10:98305400-98325000	Strong transcription	Rectal Mucosa Donor 29	rectum
35	chr10:98305800-98325000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr10:98307400-98319600	Weak transcription	Brain Substantia Nigra	brain
37	chr10:98307400-98331200	Weak transcription	Fetal Brain Male	brain
38	chr10:98307600-98328200	Weak transcription	Brain Hippocampus Middle	brain
39	chr10:98307600-98328600	Weak transcription	Right Ventricle	heart
40	chr10:98307800-98328600	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr10:98307800-98331000	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr10:98307800-98341600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr10:98308000-98325600	Weak transcription	Brain Anterior Caudate	brain
44	chr10:98308000-98330800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
45	chr10:98308600-98319800	Weak transcription	Fetal Stomach	stomach
46	chr10:98308600-98320600	Weak transcription	Fetal Intestine Small	intestine
47	chr10:98308600-98320600	Strong transcription	HUVEC	blood vessel
48	chr10:98310000-98323400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
49	chr10:98310200-98320600	Strong transcription	A549	lung
50	chr10:98310400-98328400	Weak transcription	Fetal Brain Female	brain

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