Variant report

Variant	rs201880599
Chromosome Location	chr8:119391606-119391607
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv612047	chr8:118939094-119468609	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1015380	chr8:118948652-119418389	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv539736	chr8:118948652-119418389	Flanking Active TSS Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv1032681	chr8:119153316-119609948	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv539737	chr8:119153316-119609948	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
6	nsv1016379	chr8:119164234-119448910	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
7	nsv831443	chr8:119390590-119590662	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119323000-119394000	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr8:119359600-119398600	Weak transcription	Lung	lung
3	chr8:119362600-119395400	Weak transcription	Pancreas	Pancrea
4	chr8:119362800-119398200	Weak transcription	GM12878-XiMat	blood
5	chr8:119366200-119394000	Weak transcription	Gastric	stomach
6	chr8:119381200-119393600	Weak transcription	Fetal Intestine Small	intestine
7	chr8:119382800-119395200	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr8:119383000-119399400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr8:119384200-119392600	Weak transcription	Esophagus	oesophagus
10	chr8:119385200-119399000	Weak transcription	Brain Angular Gyrus	brain
11	chr8:119386200-119395200	Weak transcription	Fetal Intestine Large	intestine
12	chr8:119386600-119393600	Weak transcription	Liver	Liver
13	chr8:119387200-119399800	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr8:119388000-119394000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr8:119389000-119391800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr8:119389400-119392800	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr8:119389600-119391800	Weak transcription	Primary B cells from peripheral blood	blood
18	chr8:119389600-119394400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr8:119390000-119393800	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr8:119390400-119404000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr8:119391400-119392800	Enhancers	NHEK	skin
22	chr8:119391400-119393000	Enhancers	Hela-S3	cervix
23	chr8:119391400-119394400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
24	chr8:119391600-119392400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr8:119391600-119392600	Enhancers	A549	lung
26	chr8:119391600-119392800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr8:119391600-119399000	Weak transcription	Aorta	Aorta

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