Variant report

Variant	rs201891696
Chromosome Location	chr12:9138774-9138775
allele	-/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr12:9138659-9138821	Hela-S3	cervix:	n/a	chr12:9138759-9138770
2	CEBPB	chr12:9138649-9138900	HepG2	liver:	n/a	chr12:9138759-9138770
3	CEBPB	chr12:9138641-9138876	IMR90	lung:	n/a	chr12:9138759-9138770

Variant related genes	Relation type
KLRG1	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832327	chr12:9081779-9246220	Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1045317	chr12:9113216-9544655	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
3	nsv819596	chr12:9113514-9141537	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv2754892	chr12:9136351-9179007	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv3433894	chr12:9138662-9139134	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:9133200-9139800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr12:9133600-9140600	Weak transcription	Spleen	Spleen
3	chr12:9133800-9139000	Weak transcription	Primary T cells from cord blood	blood
4	chr12:9133800-9164600	Weak transcription	Psoas Muscle	Psoas
5	chr12:9133800-9170200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr12:9135800-9141800	Weak transcription	Primary B cells from cord blood	blood
7	chr12:9137600-9139800	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr12:9137600-9139800	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr12:9137600-9142000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr12:9137800-9141800	Enhancers	Primary T cells fromperipheralblood	blood
11	chr12:9137800-9141800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr12:9137800-9142200	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr12:9138000-9140200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr12:9138000-9142200	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr12:9138000-9143000	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr12:9138400-9139800	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr12:9138400-9140200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr12:9138400-9140200	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr12:9138400-9142200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr12:9138600-9142200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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