Variant report

Variant	rs201923773
Chromosome Location	chr6:118028211-118028212
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532050	chr6:117528154-118203005	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv830786	chr6:118026955-118201660	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv969438	chr6:118028073-118031508	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:117999000-118039800	Weak transcription	Gastric	stomach
2	chr6:117999000-118042000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:117999200-118029600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:118000800-118029400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr6:118008800-118029600	Weak transcription	Colonic Mucosa	Colon
6	chr6:118009400-118039800	Weak transcription	Small Intestine	intestine
7	chr6:118012600-118039600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr6:118014400-118029000	Weak transcription	A549	lung
9	chr6:118015600-118030200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:118016600-118029400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr6:118016600-118040000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:118016800-118028800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr6:118016800-118029400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr6:118016800-118032400	Weak transcription	Fetal Stomach	stomach
15	chr6:118017000-118029800	Weak transcription	Brain Substantia Nigra	brain
16	chr6:118017000-118033200	Weak transcription	Fetal Intestine Small	intestine
17	chr6:118017000-118040000	Weak transcription	Pancreas	Pancrea
18	chr6:118017600-118029400	Weak transcription	Rectal Smooth Muscle	rectum
19	chr6:118017800-118029400	Weak transcription	Fetal Brain Male	brain
20	chr6:118018000-118029600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr6:118018000-118029600	Weak transcription	Psoas Muscle	Psoas
22	chr6:118021600-118028400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr6:118021600-118032600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr6:118021800-118028400	Strong transcription	HUES64 Cell Line	embryonic stem cell
25	chr6:118021800-118028400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr6:118022800-118028400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr6:118022800-118028400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
28	chr6:118022800-118028400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr6:118023000-118028400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr6:118023000-118028400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr6:118023000-118028400	Strong transcription	Dnd41	blood
32	chr6:118023200-118028400	Strong transcription	HUES6 Cell Line	embryonic stem cell
33	chr6:118023200-118028400	Strong transcription	Liver	Liver
34	chr6:118023200-118028400	Strong transcription	Duodenum Mucosa	Duodenum
35	chr6:118023200-118028400	Strong transcription	K562	blood
36	chr6:118023800-118028400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
37	chr6:118023800-118028400	Strong transcription	NH-A	brain
38	chr6:118024000-118028400	Strong transcription	H1 Cell Line	embryonic stem cell
39	chr6:118024200-118028400	Strong transcription	Ovary	ovary
40	chr6:118024800-118029200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr6:118025600-118034200	Weak transcription	HMEC	breast
42	chr6:118026600-118028400	Strong transcription	Lung	lung
43	chr6:118026800-118028400	Strong transcription	Skeletal Muscle Male	skeletal muscle
44	chr6:118026800-118029400	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr6:118026800-118032000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr6:118026800-118034200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr6:118026800-118034200	Weak transcription	Aorta	Aorta
48	chr6:118027000-118034200	Weak transcription	Right Ventricle	heart
49	chr6:118027200-118029600	Weak transcription	Brain Anterior Caudate	brain
50	chr6:118027200-118032600	Weak transcription	HSMMtube	muscle

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