Variant report

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10494579	0.81[ASN][1000 genomes]
rs1078925	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1111087	0.81[ASN][1000 genomes]
rs13375618	0.81[ASN][1000 genomes]
rs13375785	0.81[ASN][1000 genomes]
rs16822649	0.81[ASN][1000 genomes]
rs16822650	0.81[ASN][1000 genomes]
rs16822722	0.81[ASN][1000 genomes]
rs16822757	0.81[ASN][1000 genomes]
rs16822764	0.81[ASN][1000 genomes]
rs16822783	0.81[ASN][1000 genomes]
rs16822793	0.81[ASN][1000 genomes]
rs1810915	0.81[ASN][1000 genomes]
rs1930289	0.81[ASN][1000 genomes]
rs2161987	0.81[ASN][1000 genomes]
rs34584127	0.92[ASN][1000 genomes]
rs4354502	0.81[ASN][1000 genomes]
rs4543760	0.81[ASN][1000 genomes]
rs56797986	0.81[ASN][1000 genomes]
rs59737381	0.81[ASN][1000 genomes]
rs59786945	0.85[ASN][1000 genomes]
rs59949779	0.81[ASN][1000 genomes]
rs6424930	0.92[ASN][1000 genomes]
rs73055581	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73057576	0.81[ASN][1000 genomes]
rs73057595	0.81[ASN][1000 genomes]
rs73057598	0.81[ASN][1000 genomes]
rs73059524	0.81[ASN][1000 genomes]
rs73059529	0.81[ASN][1000 genomes]
rs73059544	0.81[ASN][1000 genomes]
rs7543951	0.81[ASN][1000 genomes]
rs755483	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530079	chr1:183797938-184639971	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1006655	chr1:183922288-184186677	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:184162600-184191400	Weak transcription	Right Ventricle	heart
2	chr1:184169200-184187600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:184171600-184179000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr1:184171600-184179200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr1:184176400-184179000	Weak transcription	Left Ventricle	heart
6	chr1:184176400-184179000	Weak transcription	Right Atrium	heart
7	chr1:184178000-184180000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr1:184178200-184179400	Enhancers	Fetal Muscle Leg	muscle
9	chr1:184178400-184178800	Weak transcription	Fetal Heart	heart

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