Variant report

Variant	rs201975832
Chromosome Location	chr15:75108980-75108981
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr15:75108960-75109110	HRE	kidney:	n/a	chr15:75109071-75109084
2	GATA3	chr15:75108978-75110143	MCF-7	breast:	n/a	chr15:75109980-75109987
3	YY1	chr15:75108969-75109258	K562	blood:	n/a	chr15:75109058-75109074 chr15:75109059-75109081 chr15:75109059-75109069
4	YY1	chr15:75108887-75109321	K562	blood:	n/a	chr15:75109058-75109074 chr15:75109059-75109081 chr15:75109059-75109069
5	REST	chr15:75108845-75109087	H1-hESC	embryonic stem cell:	n/a	chr15:75109071-75109084

No.	Distal block	Cell Line	Cell type
1	chr15:75074156..75079604-chr15:75107384..75112501,9	MCF-7	breast:
2	chr15:75107962..75109830-chr15:75247955..75249471,2	K562	blood:
3	chr15:75092200..75093072-chr15:75108800..75110484,5	MCF-7	breast:
4	chr15:75081235..75085402-chr15:75108223..75111318,4	MCF-7	breast:
5	chr15:75108017..75109912-chr15:75114230..75116710,2	MCF-7	breast:
6	chr15:75072350..75078841-chr15:75107920..75114107,12	MCF-7	breast:
7	chr15:74907471..74909461-chr15:75108949..75111187,2	MCF-7	breast:
8	chr15:75108356..75114001-chr15:75126388..75130558,9	MCF-7	breast:
9	chr15:75106165..75113668-chr15:75132311..75136608,10	MCF-7	breast:
10	chr15:75080218..75087203-chr15:75106250..75113071,13	MCF-7	breast:
11	chr15:75107985..75111072-chr15:75197111..75200997,5	MCF-7	breast:
12	chr15:75105168..75109047-chr15:75134120..75137766,4	K562	blood:

Variant related genes	Relation type
ENSG00000261606	TF binding region
LMAN1L	TF binding region
ENSG00000178761	Chromatin interaction
ENSG00000264386	Chromatin interaction
ENSG00000178718	Chromatin interaction
ENSG00000179335	Chromatin interaction
ENSG00000260919	Chromatin interaction
ENSG00000140474	Chromatin interaction
ENSG00000103653	Chromatin interaction
ENSG00000140506	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904380	chr15:74869438-75142761	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv833055	chr15:74988344-75166288	Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv520527	chr15:75108636-75122856	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv904381	chr15:75108636-75242155	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75096000-75109000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr15:75096200-75109600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr15:75096800-75109000	Weak transcription	Fetal Intestine Large	intestine
4	chr15:75096800-75109200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr15:75096800-75109400	Weak transcription	HUVEC	blood vessel
6	chr15:75096800-75109800	Weak transcription	NH-A	brain
7	chr15:75097000-75109200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr15:75097000-75109400	Weak transcription	Brain Anterior Caudate	brain
9	chr15:75097200-75109400	Weak transcription	Lung	lung
10	chr15:75097600-75111000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr15:75097800-75109200	Weak transcription	Brain Germinal Matrix	brain
12	chr15:75101200-75109000	Weak transcription	HMEC	breast
13	chr15:75101800-75109200	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr15:75101800-75113200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr15:75102600-75109600	Weak transcription	NHLF	lung
16	chr15:75107000-75112200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr15:75107200-75109000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr15:75107200-75109600	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr15:75107200-75110000	Enhancers	Colon Smooth Muscle	Colon
20	chr15:75107200-75111200	Enhancers	Rectal Mucosa Donor 31	rectum
21	chr15:75107200-75111400	Enhancers	Esophagus	oesophagus
22	chr15:75107200-75111800	Enhancers	Colonic Mucosa	Colon
23	chr15:75107200-75112400	Enhancers	Rectal Mucosa Donor 29	rectum
24	chr15:75107200-75114400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr15:75107600-75109000	Enhancers	Primary B cells from peripheral blood	blood
26	chr15:75107600-75109200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr15:75107800-75109000	Weak transcription	Brain Cingulate Gyrus	brain
28	chr15:75107800-75109000	Weak transcription	Fetal Brain Male	brain
29	chr15:75107800-75109800	Weak transcription	A549	lung
30	chr15:75108000-75109000	Weak transcription	Placenta	Placenta
31	chr15:75108000-75109200	Weak transcription	Duodenum Mucosa	Duodenum
32	chr15:75108000-75109400	Weak transcription	Stomach Smooth Muscle	stomach
33	chr15:75108000-75109600	Weak transcription	Pancreas	Pancrea
34	chr15:75108000-75109800	Weak transcription	Liver	Liver
35	chr15:75108000-75113000	Weak transcription	Right Atrium	heart
36	chr15:75108200-75109200	Weak transcription	Fetal Heart	heart
37	chr15:75108200-75109200	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr15:75108200-75109400	Weak transcription	Stomach Mucosa	stomach
39	chr15:75108200-75111000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr15:75108200-75111000	Weak transcription	GM12878-XiMat	blood
41	chr15:75108200-75111400	Weak transcription	HSMMtube	muscle
42	chr15:75108400-75109400	Weak transcription	Right Ventricle	heart
43	chr15:75108400-75109600	Weak transcription	Rectal Smooth Muscle	rectum
44	chr15:75108400-75110400	Weak transcription	Gastric	stomach
45	chr15:75108400-75110600	Weak transcription	Monocytes-CD14+_RO01746	blood
46	chr15:75108600-75109000	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr15:75108600-75109000	Active TSS	Spleen	Spleen
48	chr15:75108600-75109000	Weak transcription	Hela-S3	cervix
49	chr15:75108600-75109800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
50	chr15:75108600-75110000	Enhancers	HUES6 Cell Line	embryonic stem cell

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