Variant report

Variant	rs201985187
Chromosome Location	chr5:49405931-49405932
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3334856	chr5:49405642-49442693	Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	n/a
2	esv3353509	chr5:49405642-49442693	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	n/a
3	esv3365495	chr5:49405642-49442693	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
4	esv3403552	chr5:49405642-49442693	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	n/a
5	esv3451841	chr5:49405642-49442693	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
6	esv997367	chr5:49405763-49441191	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS	n/a	n/a	inside rSNPs	n/a
7	esv17894	chr5:49405763-49442098	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
8	esv19415	chr5:49405763-49485157	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	diseases
9	nsv820439	chr5:49405763-49552643	ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv15107	chr5:49405763-49562327	Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv6051	chr5:49405841-49436199	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:49405600-49406000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
2	chr5:49405600-49406000	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr5:49405600-49406000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:49405600-49406000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
5	chr5:49405600-49406000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
6	chr5:49405600-49406000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr5:49405600-49406000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr5:49405600-49406000	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr5:49405600-49406000	ZNF genes & repeats	Primary B cells from cord blood	blood
10	chr5:49405600-49406000	ZNF genes & repeats	Primary T cells from cord blood	blood
11	chr5:49405600-49406000	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
12	chr5:49405600-49406000	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
13	chr5:49405600-49406000	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
14	chr5:49405600-49406000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr5:49405600-49406000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr5:49405600-49406000	ZNF genes & repeats	Aorta	Aorta
17	chr5:49405600-49406000	ZNF genes & repeats	Liver	Liver
18	chr5:49405600-49406000	ZNF genes & repeats	Brain Germinal Matrix	brain
19	chr5:49405600-49406000	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
20	chr5:49405600-49406000	ZNF genes & repeats	Brain Substantia Nigra	brain
21	chr5:49405600-49406000	ZNF genes & repeats	Colon Smooth Muscle	Colon
22	chr5:49405600-49406000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
23	chr5:49405600-49406000	ZNF genes & repeats	Fetal Brain Male	brain
24	chr5:49405600-49406000	ZNF genes & repeats	Fetal Heart	heart
25	chr5:49405600-49406000	ZNF genes & repeats	Fetal Lung	lung
26	chr5:49405600-49406000	ZNF genes & repeats	Left Ventricle	heart
27	chr5:49405600-49406000	ZNF genes & repeats	Placenta Amnion	Placenta Amnion
28	chr5:49405600-49406000	ZNF genes & repeats	Psoas Muscle	Psoas
29	chr5:49405600-49406000	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
30	chr5:49405600-49406000	ZNF genes & repeats	Rectal Smooth Muscle	rectum
31	chr5:49405600-49406000	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
32	chr5:49405600-49406000	ZNF genes & repeats	Stomach Mucosa	stomach
33	chr5:49405600-49406000	ZNF genes & repeats	Thymus	Thymus
34	chr5:49405600-49406000	ZNF genes & repeats	NH-A	brain
35	chr5:49405600-49406200	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
36	chr5:49405600-49406200	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr5:49405600-49406200	ZNF genes & repeats	Small Intestine	intestine
38	chr5:49405800-49406000	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
39	chr5:49405800-49406000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr5:49405800-49406000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr5:49405800-49406000	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
42	chr5:49405800-49406000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr5:49405800-49406000	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr5:49405800-49406000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
45	chr5:49405800-49406000	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
46	chr5:49405800-49406000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
47	chr5:49405800-49406000	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr5:49405800-49406000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr5:49405800-49406000	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
50	chr5:49405800-49406000	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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