Variant report

Variant	rs201990546
Chromosome Location	chr19:35786738-35786739
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:35759682..35761822-chr19:35786505..35788212,2	K562	blood:
2	chr19:35786171..35788602-chr19:35798806..35801714,2	MCF-7	breast:
3	chr19:35785339..35786931-chr19:35792153..35795089,3	MCF-7	breast:
4	chr19:35775409..35778067-chr19:35786470..35789278,2	K562	blood:
5	chr19:35644869..35647313-chr19:35785254..35786934,2	K562	blood:
6	chr19:35785237..35787422-chr19:35789802..35791961,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000089327	Chromatin interaction
ENSG00000105698	Chromatin interaction
ENSG00000105695	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv1060100	chr19:35658505-36170042	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv543993	chr19:35658505-36170042	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
4	nsv510765	chr19:35708226-35890668	Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
5	esv2758497	chr19:35711078-35887113	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
6	esv2758758	chr19:35711078-35887113	Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
7	nsv911618	chr19:35734107-35807845	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
8	esv1836312	chr19:35741456-35786868	Enhancers Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	n/a
9	nsv833810	chr19:35782588-35971959	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
10	esv3399211	chr19:35786312-35791010	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	5 gene(s)	inside rSNPs	n/a
11	esv3329030	chr19:35786312-35791110	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	n/a
12	esv3379757	chr19:35786412-35791110	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	5 gene(s)	inside rSNPs	n/a
13	esv3447618	chr19:35786412-35791110	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:35774800-35809600	Weak transcription	Right Atrium	heart
2	chr19:35784000-35790200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr19:35784400-35787000	Enhancers	Fetal Lung	lung
4	chr19:35784800-35789600	Enhancers	Primary hematopoietic stem cells	blood
5	chr19:35785200-35788000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr19:35785200-35788200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr19:35785200-35790200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr19:35785400-35788200	Weak transcription	Brain Anterior Caudate	brain
9	chr19:35785600-35787000	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr19:35785600-35788400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr19:35785800-35787200	Bivalent Enhancer	Placenta	Placenta
12	chr19:35785800-35788600	Enhancers	Primary B cells from cord blood	blood
13	chr19:35785800-35789600	Enhancers	Primary B cells from peripheral blood	blood
14	chr19:35786000-35786800	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr19:35786000-35787000	Bivalent Enhancer	Fetal Stomach	stomach
16	chr19:35786000-35787000	Enhancers	Placenta Amnion	Placenta Amnion
17	chr19:35786200-35786800	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr19:35786200-35786800	Bivalent Enhancer	Fetal Thymus	thymus
19	chr19:35786200-35786800	Enhancers	Spleen	Spleen
20	chr19:35786200-35787000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr19:35786200-35787200	Transcr. at gene 5' and 3'	Brain Hippocampus Middle	brain
22	chr19:35786200-35787400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
23	chr19:35786200-35787400	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
24	chr19:35786200-35788400	Enhancers	Primary T helper naive cells from peripheral blood	blood
25	chr19:35786400-35786800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
26	chr19:35786400-35787000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr19:35786400-35787200	Enhancers	H1 Cell Line	embryonic stem cell
28	chr19:35786400-35787200	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr19:35786400-35787200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
30	chr19:35786400-35787400	Enhancers	Primary T cells fromperipheralblood	blood
31	chr19:35786400-35787400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
32	chr19:35786400-35787400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
33	chr19:35786400-35787400	Enhancers	Primary T killer memory cells from peripheral blood	blood
34	chr19:35786400-35787800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
35	chr19:35786400-35787800	Enhancers	Primary T helper cells fromperipheralblood	blood
36	chr19:35786400-35788400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
37	chr19:35786400-35788600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
38	chr19:35786400-35788600	Enhancers	GM12878-XiMat	blood
39	chr19:35786600-35786800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr19:35786600-35786800	Enhancers	iPS-20b Cell Line	embryonic stem cell
41	chr19:35786600-35786800	Active TSS	Primary T cells from cord blood	blood
42	chr19:35786600-35786800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr19:35786600-35786800	Bivalent Enhancer	HepG2	liver
44	chr19:35786600-35787000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr19:35786600-35787200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr19:35786600-35787200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
47	chr19:35786600-35787200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr19:35786600-35787200	Genic enhancers	Brain Cingulate Gyrus	brain
49	chr19:35786600-35787200	Enhancers	Brain Substantia Nigra	brain
50	chr19:35786600-35788200	Weak transcription	Brain Angular Gyrus	brain

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