Variant report

Variant	rs202020522
Chromosome Location	chr10:22629275-22629276
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22290966..22293742-chr10:22628058..22631636,3	MCF-7	breast:
2	chr10:22603818..22606688-chr10:22628346..22630666,3	MCF-7	breast:
3	chr10:22628552..22630846-chr8:144350757..144353211,2	MCF-7	breast:
4	chr10:22625398..22631647-chr10:22676300..22682265,8	K562	blood:
5	chr10:22608172..22617536-chr10:22624000..22632852,24	MCF-7	breast:
6	chr10:22626594..22629455-chr10:22675560..22678506,3	K562	blood:
7	chr10:22628696..22632444-chr10:22679412..22682265,6	K562	blood:

Variant related genes	Relation type
ENSG00000250571	Chromatin interaction
ENSG00000136770	Chromatin interaction
ENSG00000077327	Chromatin interaction
ENSG00000168283	Chromatin interaction
ENSG00000148444	Chromatin interaction
ENSG00000269897	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825292	chr10:22560347-22642200	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv825293	chr10:22575226-22637618	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv825294	chr10:22590627-22644910	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv825295	chr10:22591275-22643207	Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv825296	chr10:22591339-22638994	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
6	nsv894950	chr10:22591830-22639903	Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	nsv894955	chr10:22594765-22631256	Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
8	nsv894956	chr10:22594765-22633193	Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
9	nsv894957	chr10:22594765-22637381	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
10	esv1816646	chr10:22594765-22639707	Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
11	nsv894958	chr10:22594765-22639903	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
12	nsv825297	chr10:22596793-22637576	Bivalent Enhancer Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
13	nsv825299	chr10:22596793-22638994	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
14	nsv550207	chr10:22605112-22631256	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
15	esv3512115	chr10:22628355-22629590	Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
16	esv3512116	chr10:22628355-22629590	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22628800-22629400	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
2	chr10:22628800-22629400	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
3	chr10:22628800-22629400	Flanking Bivalent TSS/Enh	Primary T helper naive cells fromperipheralblood	blood
4	chr10:22628800-22629400	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
5	chr10:22628800-22629400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr10:22628800-22629400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr10:22628800-22629400	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
8	chr10:22628800-22629400	Active TSS	Fetal Muscle Trunk	muscle
9	chr10:22628800-22629400	Flanking Bivalent TSS/Enh	HUVEC	blood vessel
10	chr10:22628800-22629400	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
11	chr10:22628800-22629600	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
12	chr10:22628800-22629600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
13	chr10:22628800-22629600	Flanking Bivalent TSS/Enh	Primary Natural Killer cells fromperipheralblood	blood
14	chr10:22628800-22629600	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr10:22628800-22629600	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr10:22628800-22630000	Active TSS	HMEC	breast
17	chr10:22628800-22630200	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr10:22628800-22630200	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr10:22628800-22630200	Active TSS	Brain Inferior Temporal Lobe	brain
20	chr10:22628800-22630200	Active TSS	Brain Substantia Nigra	brain
21	chr10:22628800-22630200	Active TSS	Placenta Amnion	Placenta Amnion
22	chr10:22628800-22630400	Active TSS	Brain Angular Gyrus	brain
23	chr10:22628800-22630400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
24	chr10:22628800-22630400	Active TSS	HSMMtube	muscle
25	chr10:22628800-22630600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
26	chr10:22628800-22630600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
27	chr10:22628800-22630600	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
28	chr10:22628800-22630600	Active TSS	Psoas Muscle	Psoas
29	chr10:22628800-22630800	Bivalent/Poised TSS	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr10:22629000-22629400	Flanking Bivalent TSS/Enh	Primary T helper memory cells from peripheral blood 1	blood
31	chr10:22629000-22629400	Flanking Bivalent TSS/Enh	Primary T killer naive cells fromperipheralblood	blood
32	chr10:22629000-22629400	Flanking Bivalent TSS/Enh	Primary T killer memory cells from peripheral blood	blood
33	chr10:22629000-22629400	Flanking Bivalent TSS/Enh	Fetal Brain Male	brain
34	chr10:22629000-22629400	Flanking Bivalent TSS/Enh	Fetal Thymus	thymus
35	chr10:22629000-22629400	Flanking Bivalent TSS/Enh	Thymus	Thymus
36	chr10:22629000-22629600	Flanking Bivalent TSS/Enh	Primary T helper cells fromperipheralblood	blood
37	chr10:22629000-22629600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
38	chr10:22629000-22630000	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
39	chr10:22629000-22630000	Bivalent/Poised TSS	Brain Germinal Matrix	brain
40	chr10:22629000-22630000	Active TSS	Colonic Mucosa	Colon
41	chr10:22629000-22630000	Active TSS	Sigmoid Colon	Sigmoid Colon
42	chr10:22629000-22630000	Active TSS	Stomach Smooth Muscle	stomach
43	chr10:22629000-22630200	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr10:22629000-22630200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr10:22629000-22630200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr10:22629000-22630400	Active TSS	Brain Hippocampus Middle	brain
47	chr10:22629000-22630400	Active TSS	A549	lung
48	chr10:22629000-22630600	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr10:22629000-22630600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
50	chr10:22629000-22630600	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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