Variant report

Variant	rs202025846
Chromosome Location	chr7:129301318-129301319
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:129300901..129303855-chr7:129648023..129650206,2	K562	blood:

Variant related genes	Relation type
ENSG00000244036	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3477492	chr7:129298416-129304014	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3359315	chr7:129298866-129303114	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3395322	chr7:129299366-129303064	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3500340	chr7:129299408-129302495	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3500342	chr7:129299827-129302146	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3500343	chr7:129299827-129302146	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3441886	chr7:129299973-129302102	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv3477491	chr7:129300004-129302116	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv3477493	chr7:129300004-129302116	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129283800-129331600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr7:129286600-129301600	Weak transcription	HSMMtube	muscle
3	chr7:129286800-129304400	Weak transcription	NHLF	lung
4	chr7:129287200-129301600	Weak transcription	Psoas Muscle	Psoas
5	chr7:129289200-129314000	Weak transcription	Fetal Brain Male	brain
6	chr7:129290000-129325800	Weak transcription	Stomach Mucosa	stomach
7	chr7:129290400-129304600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr7:129293600-129301600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr7:129293800-129311200	Weak transcription	Brain Anterior Caudate	brain
10	chr7:129293800-129311400	Weak transcription	Brain Angular Gyrus	brain
11	chr7:129296600-129301600	Strong transcription	Primary T helper cells fromperipheralblood	blood
12	chr7:129296800-129301400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr7:129297000-129301600	Strong transcription	Fetal Lung	lung
14	chr7:129297000-129301600	Strong transcription	Skeletal Muscle Female	skeletal muscle
15	chr7:129297000-129302200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr7:129297000-129302200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr7:129297000-129302200	Strong transcription	Rectal Mucosa Donor 31	rectum
18	chr7:129297200-129301400	Strong transcription	Ovary	ovary
19	chr7:129297200-129301600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr7:129297200-129301800	Strong transcription	Adipose Nuclei	Adipose
21	chr7:129297200-129302000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr7:129297200-129302000	Strong transcription	Rectal Mucosa Donor 29	rectum
23	chr7:129297200-129302200	Strong transcription	Primary T helper naive cells from peripheral blood	blood
24	chr7:129297200-129302200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr7:129297200-129302200	Strong transcription	Stomach Smooth Muscle	stomach
26	chr7:129297200-129302400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
27	chr7:129297200-129302600	ZNF genes & repeats	Dnd41	blood
28	chr7:129297200-129303200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr7:129297400-129302000	Strong transcription	Rectal Smooth Muscle	rectum
30	chr7:129297600-129302600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr7:129297800-129349800	Weak transcription	Small Intestine	intestine
32	chr7:129298000-129304400	Weak transcription	NHDF-Ad	bronchial
33	chr7:129298200-129301600	Strong transcription	Brain Hippocampus Middle	brain
34	chr7:129298200-129302200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
35	chr7:129298200-129302600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
36	chr7:129298600-129301600	Weak transcription	Brain Substantia Nigra	brain
37	chr7:129298600-129302200	ZNF genes & repeats	Thymus	Thymus
38	chr7:129298600-129309800	Weak transcription	Fetal Heart	heart
39	chr7:129299000-129303400	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
40	chr7:129299200-129302000	ZNF genes & repeats	Brain Germinal Matrix	brain
41	chr7:129299200-129302200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
42	chr7:129299200-129302200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr7:129299200-129302400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr7:129299200-129302400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
45	chr7:129299200-129302600	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr7:129299400-129301800	Strong transcription	Brain Inferior Temporal Lobe	brain
47	chr7:129299400-129302000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr7:129299400-129302000	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
49	chr7:129299400-129302000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
50	chr7:129299400-129302200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links