Variant report

Variant	rs202049671
Chromosome Location	chr4:15704317-15704318
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:15655590..15657245-chr4:15703796..15706264,2	K562	blood:

Variant related genes	Relation type
ENSG00000118564	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2757923	chr4:15444617-15749520	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv2759227	chr4:15444617-15749520	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv428439	chr4:15556961-15749520	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	esv3345585	chr4:15704254-15707452	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv3414958	chr4:15704254-15708452	Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15684000-15704400	Weak transcription	Left Ventricle	heart
2	chr4:15684800-15704400	Weak transcription	Aorta	Aorta
3	chr4:15686600-15704400	Weak transcription	Thymus	Thymus
4	chr4:15697600-15704400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr4:15697600-15723600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr4:15702600-15704400	Enhancers	Liver	Liver
7	chr4:15703200-15704600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
8	chr4:15703200-15706600	Weak transcription	HepG2	liver
9	chr4:15703600-15704400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr4:15703800-15704400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr4:15703800-15704400	Enhancers	Brain Substantia Nigra	brain
12	chr4:15703800-15704600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr4:15703800-15704600	Enhancers	Fetal Heart	heart
14	chr4:15703800-15704800	Flanking Active TSS	Primary B cells from cord blood	blood
15	chr4:15703800-15705400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
16	chr4:15703800-15705600	Active TSS	Stomach Smooth Muscle	stomach
17	chr4:15704000-15704400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr4:15704000-15704400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr4:15704000-15704400	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr4:15704000-15704400	Flanking Active TSS	Primary T cells from cord blood	blood
21	chr4:15704000-15704400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
22	chr4:15704000-15704400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
23	chr4:15704000-15704400	Enhancers	Primary T helper naive cells from peripheral blood	blood
24	chr4:15704000-15704400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
25	chr4:15704000-15704400	Enhancers	Primary T helper cells PMA-I stimulated	--
26	chr4:15704000-15704400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr4:15704000-15704400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
28	chr4:15704000-15704400	Enhancers	Muscle Satellite Cultured Cells	--
29	chr4:15704000-15704400	Enhancers	Brain Angular Gyrus	brain
30	chr4:15704000-15704400	Enhancers	Brain Anterior Caudate	brain
31	chr4:15704000-15704400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
32	chr4:15704000-15704400	Enhancers	Colon Smooth Muscle	Colon
33	chr4:15704000-15704400	Flanking Active TSS	Duodenum Mucosa	Duodenum
34	chr4:15704000-15704400	Enhancers	Duodenum Smooth Muscle	Duodenum
35	chr4:15704000-15704400	Flanking Active TSS	Fetal Intestine Large	intestine
36	chr4:15704000-15704400	Enhancers	Placenta	Placenta
37	chr4:15704000-15704400	Enhancers	Right Atrium	heart
38	chr4:15704000-15704400	Enhancers	Skeletal Muscle Female	skeletal muscle
39	chr4:15704000-15704400	Flanking Active TSS	Dnd41	blood
40	chr4:15704000-15704400	Enhancers	HUVEC	blood vessel
41	chr4:15704000-15704600	Flanking Active TSS	Primary hematopoietic stem cells	blood
42	chr4:15704000-15704600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr4:15704000-15704600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr4:15704000-15704600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
45	chr4:15704000-15704600	Flanking Active TSS	Fetal Intestine Small	intestine
46	chr4:15704000-15704600	Enhancers	Gastric	stomach
47	chr4:15704000-15704600	Enhancers	Lung	lung
48	chr4:15704000-15704600	Enhancers	Sigmoid Colon	Sigmoid Colon
49	chr4:15704000-15704600	Enhancers	Stomach Mucosa	stomach
50	chr4:15704000-15704600	Flanking Active TSS	NHEK	skin

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