Variant report

Variant	rs202058815
Chromosome Location	chr2:178286041-178286042
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:178256529..178258320-chr2:178284529..178287506,2	K562	blood:
2	chr2:178281186..178282700-chr2:178284322..178286913,2	K562	blood:

Variant related genes	Relation type
ENSG00000213963	Chromatin interaction
ENSG00000116044	Chromatin interaction
ENSG00000018510	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999086	chr2:178262348-178773585	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv536055	chr2:178262348-178773585	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	esv3457151	chr2:178285706-178290004	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178258800-178294200	Weak transcription	Thymus	Thymus
2	chr2:178263400-178291800	Weak transcription	Duodenum Mucosa	Duodenum
3	chr2:178264200-178291600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr2:178265600-178287000	Weak transcription	K562	blood
5	chr2:178270400-178294400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr2:178271800-178291600	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr2:178272800-178295200	Weak transcription	Left Ventricle	heart
8	chr2:178273000-178288800	Weak transcription	GM12878-XiMat	blood
9	chr2:178273400-178286600	Weak transcription	HSMMtube	muscle
10	chr2:178273400-178288600	Weak transcription	Primary T cells from cord blood	blood
11	chr2:178274600-178291800	Weak transcription	Primary B cells from cord blood	blood
12	chr2:178276400-178291400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr2:178276800-178289800	Weak transcription	Fetal Intestine Large	intestine
14	chr2:178276800-178294400	Weak transcription	Psoas Muscle	Psoas
15	chr2:178277400-178291800	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr2:178279600-178294400	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr2:178280200-178291600	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr2:178280400-178296000	Weak transcription	Small Intestine	intestine
19	chr2:178280800-178294400	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr2:178281200-178289400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr2:178281200-178291600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr2:178281200-178292200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr2:178281800-178291800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr2:178282800-178287200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr2:178283000-178294600	Weak transcription	Fetal Kidney	kidney
26	chr2:178283200-178286600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr2:178283800-178294200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr2:178283800-178295200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr2:178284000-178286200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr2:178284000-178294200	Weak transcription	NHLF	lung
31	chr2:178284200-178286600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr2:178284200-178291600	Weak transcription	Fetal Lung	lung
33	chr2:178284400-178286600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr2:178284400-178286600	Weak transcription	NH-A	brain
35	chr2:178284400-178286800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr2:178284400-178289400	Weak transcription	Adipose Nuclei	Adipose
37	chr2:178284400-178291800	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr2:178284400-178292000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr2:178284400-178292000	Weak transcription	Rectal Smooth Muscle	rectum
40	chr2:178284400-178294000	Weak transcription	Fetal Thymus	thymus
41	chr2:178284600-178286800	Weak transcription	Osteobl	bone
42	chr2:178284600-178294000	Weak transcription	HSMM	muscle
43	chr2:178284600-178294400	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr2:178284600-178295800	Weak transcription	Colon Smooth Muscle	Colon
45	chr2:178284800-178286400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr2:178284800-178286400	Weak transcription	Hela-S3	cervix
47	chr2:178284800-178291000	Weak transcription	Brain Angular Gyrus	brain
48	chr2:178284800-178294200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr2:178284800-178294400	Weak transcription	Liver	Liver
50	chr2:178285000-178286800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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