Variant report

Variant	rs2020876
Chromosome Location	chr11:100962528-100962529
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10791437	1.00[CHD][hapmap]
rs10791438	1.00[CHD][hapmap]
rs10895031	1.00[CHD][hapmap]
rs11224535	1.00[CHD][hapmap]
rs11224565	1.00[CEU][hapmap]
rs471180	1.00[CHD][hapmap]
rs481991	1.00[CHD][hapmap]
rs499861	1.00[CHD][hapmap]
rs509013	1.00[CHD][hapmap]
rs509166	1.00[CHD][hapmap]
rs514101	1.00[CHD][hapmap]
rs520403	1.00[CHD][hapmap]
rs524416	1.00[CHD][hapmap]
rs536270	1.00[CHD][hapmap]
rs539204	1.00[CHD][hapmap]
rs540000	1.00[CHD][hapmap]
rs562891	1.00[CHD][hapmap]
rs594985	1.00[CHD][hapmap]
rs618907	1.00[CHD][hapmap]
rs629677	1.00[CHD][hapmap]
rs641948	1.00[CHD][hapmap]
rs652559	1.00[CHD][hapmap]
rs653344	1.00[CHD][hapmap]
rs694078	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100905400-100997600	Weak transcription	Left Ventricle	heart
2	chr11:100954400-100967200	Weak transcription	Aorta	Aorta
3	chr11:100959200-100964200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr11:100959600-100971000	Weak transcription	Fetal Lung	lung
5	chr11:100961200-100963200	Enhancers	Hela-S3	cervix
6	chr11:100961400-100964200	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr11:100961600-100966600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr11:100962200-100962800	Genic enhancers	Ovary	ovary
9	chr11:100962400-100962800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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