Variant report

Variant	rs202107564
Chromosome Location	chr10:25261450-25261451
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053278	chr10:25140776-25269093	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3386953	chr10:25260934-25261466	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25249200-25262200	Weak transcription	Fetal Stomach	stomach
2	chr10:25249200-25263800	Weak transcription	Ovary	ovary
3	chr10:25251000-25263800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr10:25253200-25262000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr10:25253200-25264000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr10:25256400-25264400	Weak transcription	Gastric	stomach
7	chr10:25259000-25263800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr10:25259200-25264200	Weak transcription	Brain Substantia Nigra	brain
9	chr10:25259200-25269000	Weak transcription	Brain Anterior Caudate	brain
10	chr10:25259400-25263400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr10:25259400-25263400	Weak transcription	Osteobl	bone
12	chr10:25259400-25263800	Weak transcription	Brain Cingulate Gyrus	brain
13	chr10:25259600-25262200	Weak transcription	Fetal Muscle Leg	muscle
14	chr10:25259600-25263200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr10:25260600-25262000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr10:25260800-25261600	Weak transcription	NHDF-Ad	bronchial
17	chr10:25260800-25261800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr10:25261400-25262000	Enhancers	HepG2	liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links