Variant report

Variant	rs202117546
Chromosome Location	chr7:69432311-69432312
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:69418634..69420209-chr7:69430250..69432320,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021538	chr7:69130236-69575753	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv538917	chr7:69130236-69575753	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv817276	chr7:69130237-69736834	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv492242	chr7:69330737-69520566	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv916265	chr7:69367265-69433076	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1031593	chr7:69367316-69445052	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv538921	chr7:69367316-69445052	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv1018289	chr7:69383450-69650885	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv538922	chr7:69383450-69650885	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv532782	chr7:69383651-70189959	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv1034281	chr7:69403828-69548378	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv538923	chr7:69403828-69548378	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv1034182	chr7:69406172-69529294	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv538924	chr7:69406172-69529294	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	esv2758119	chr7:69412504-69594161	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	esv2759536	chr7:69412504-69594161	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	nsv607429	chr7:69430748-69553093	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
19	esv2517980	chr7:69432311-69432311	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69427800-69432400	Weak transcription	Pancreas	Pancrea
2	chr7:69428000-69432400	Enhancers	Fetal Heart	heart
3	chr7:69428200-69432400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr7:69428600-69432600	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr7:69428800-69432600	Weak transcription	Aorta	Aorta
6	chr7:69430200-69432800	Weak transcription	Primary hematopoietic stem cells	blood
7	chr7:69430200-69432800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr7:69430400-69432600	Weak transcription	Primary B cells from peripheral blood	blood
9	chr7:69430600-69432800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr7:69430600-69433200	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr7:69430800-69432400	Weak transcription	Thymus	Thymus
12	chr7:69431200-69432400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr7:69431600-69433400	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr7:69431600-69434600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr7:69431800-69432400	Enhancers	Fetal Lung	lung
16	chr7:69431800-69432800	Enhancers	NH-A	brain
17	chr7:69431800-69433000	Enhancers	Placenta Amnion	Placenta Amnion
18	chr7:69432000-69432400	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr7:69432000-69432400	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr7:69432000-69432400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr7:69432000-69432400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr7:69432000-69432400	Enhancers	Fetal Brain Female	brain
23	chr7:69432000-69432400	Enhancers	Fetal Muscle Leg	muscle
24	chr7:69432000-69432600	Enhancers	Brain Substantia Nigra	brain
25	chr7:69432000-69432800	Enhancers	H9 Cell Line	embryonic stem cell
26	chr7:69432000-69433000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr7:69432000-69433000	Enhancers	Brain Inferior Temporal Lobe	brain
28	chr7:69432000-69433000	Enhancers	Colon Smooth Muscle	Colon
29	chr7:69432000-69433000	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr7:69432000-69433200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr7:69432000-69433600	Enhancers	Fetal Stomach	stomach
32	chr7:69432000-69434200	Enhancers	Fetal Brain Male	brain
33	chr7:69432000-69434800	Enhancers	HUES48 Cell Line	embryonic stem cell
34	chr7:69432000-69435000	Enhancers	iPS-15b Cell Line	embryonic stem cell
35	chr7:69432200-69432400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr7:69432200-69432400	Enhancers	HUES64 Cell Line	embryonic stem cell
37	chr7:69432200-69432400	Enhancers	Primary hematopoietic stem cells short term culture	blood
38	chr7:69432200-69432400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr7:69432200-69432400	Enhancers	Fetal Muscle Trunk	muscle
40	chr7:69432200-69432400	Enhancers	Left Ventricle	heart
41	chr7:69432200-69432400	Genic enhancers	Right Atrium	heart
42	chr7:69432200-69432400	Enhancers	Right Ventricle	heart
43	chr7:69432200-69432600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
44	chr7:69432200-69432600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr7:69432200-69432600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr7:69432200-69432600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr7:69432200-69432600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr7:69432200-69432600	Enhancers	Primary T cells from cord blood	blood
49	chr7:69432200-69432600	Enhancers	Muscle Satellite Cultured Cells	--
50	chr7:69432200-69432600	Bivalent Enhancer	Duodenum Mucosa	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links