Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:45942534..45945438-chr6:45953727..45956305,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1338466	0.84[ASN][1000 genomes]
rs2021686	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv428482	chr6:45926644-46050182	Genic enhancers Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv885867	chr6:45936223-45982976	Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45946600-45954800	Enhancers	Skeletal Muscle Female	skeletal muscle
2	chr6:45949400-45954600	Weak transcription	Fetal Kidney	kidney
3	chr6:45950600-45960200	Enhancers	Psoas Muscle	Psoas
4	chr6:45951000-45955200	Enhancers	Right Atrium	heart
5	chr6:45951200-45954800	Weak transcription	Duodenum Mucosa	Duodenum
6	chr6:45951400-45954000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr6:45951400-45954200	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr6:45951400-45956400	Weak transcription	Small Intestine	intestine
9	chr6:45951600-45954200	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr6:45952000-45954000	Strong transcription	Fetal Intestine Small	intestine
11	chr6:45952400-45954200	Enhancers	Right Ventricle	heart
12	chr6:45952400-45961400	Enhancers	Fetal Heart	heart
13	chr6:45952600-45955000	Enhancers	Placenta	Placenta
14	chr6:45952800-45956800	Enhancers	Fetal Muscle Leg	muscle
15	chr6:45953000-45954600	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr6:45953400-45953800	Weak transcription	Fetal Intestine Large	intestine
17	chr6:45953400-45954000	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr6:45953400-45954600	Enhancers	Left Ventricle	heart
19	chr6:45953400-45956400	Weak transcription	Lung	lung
20	chr6:45953400-45965600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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