Variant report

Variant	rs202172728
Chromosome Location	chr10:99092604-99092605
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:69)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:69 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:99092584-99093077	Hela-S3	cervix:	n/a	n/a
2	POLR2A	chr10:99092599-99092921	HepG2	liver:	n/a	n/a
3	POLR2A	chr10:99092397-99092905	H1-neurons	neurons:	n/a	n/a
4	POLR2A	chr10:99092357-99093886	MCF10A-Er-Src	breast:	n/a	n/a
5	STAT3	chr10:99092280-99092943	MCF10A-Er-Src	breast:	n/a	chr10:99092719-99092730
6	POLR2A	chr10:99092558-99093816	Hela-S3	cervix:	n/a	n/a
7	GTF2F1	chr10:99092598-99093442	Hela-S3	cervix:	n/a	n/a
8	CHD1	chr10:99092051-99093819	H1-hESC	embryonic stem cell:	n/a	n/a
9	POLR2A	chr10:99092404-99095093	Hela-S3	cervix:	n/a	n/a
10	MAX	chr10:99092536-99095123	NB4	blood:	n/a	n/a
11	RAD21	chr10:99092560-99093085	MCF-7	breast:	n/a	n/a
12	POLR2A	chr10:99092471-99093876	MCF10A-Er-Src	breast:	n/a	n/a
13	ESRRA	chr10:99091641-99094073	GM12878	blood:	n/a	n/a
14	POLR2A	chr10:99092555-99092912	Hela-S3	cervix:	n/a	n/a
15	MXI1	chr10:99092585-99092973	Hela-S3	cervix:	n/a	n/a
16	CUX1	chr10:99092282-99092957	K562	blood:	n/a	n/a
17	MXI1	chr10:99092405-99095483	SK-N-SH	brain:	n/a	n/a
18	MAFK	chr10:99092497-99092972	K562	blood:	n/a	n/a
19	CTCF	chr10:99092221-99093601	K562	blood:	n/a	n/a
20	POLR2A	chr10:99092523-99093095	PANC-1	pancreas:	n/a	n/a
21	CHD1	chr10:99091626-99095332	IMR90	lung:	n/a	chr10:99094876-99094886
22	RAD21	chr10:99092210-99093016	HepG2	liver:	n/a	n/a
23	CTCF	chr10:99092279-99093464	IMR90	lung:	n/a	n/a
24	POLR2A	chr10:99092411-99093004	U87	brain:	n/a	n/a
25	POLR2A	chr10:99092576-99092886	HepG2	liver:	n/a	n/a
26	POLR2A	chr10:99092489-99095101	K562	blood:	n/a	n/a
27	REST	chr10:99092403-99095120	H1-neurons	neurons:	n/a	n/a
28	POLR2A	chr10:99092290-99095050	H1-hESC	embryonic stem cell:	n/a	n/a
29	MYC	chr10:99092570-99092951	MCF10A-Er-Src	breast:	n/a	n/a
30	MAX	chr10:99092580-99094084	HepG2	liver:	n/a	n/a
31	TBP	chr10:99092582-99093729	K562	blood:	n/a	n/a
32	NFIC	chr10:99092543-99093029	HepG2	liver:	n/a	n/a
33	RAD21	chr10:99092244-99093477	Hela-S3	cervix:	n/a	n/a
34	POLR2A	chr10:99092458-99094930	Hela-S3	cervix:	n/a	n/a
35	POLR2A	chr10:99092539-99093158	PANC-1	pancreas:	n/a	n/a
36	IKZF1	chr10:99092552-99093433	GM12878	blood:	n/a	n/a
37	JUND	chr10:99092592-99093700	K562	blood:	n/a	n/a
38	POLR2A	chr10:99091687-99093824	HepG2	liver:	n/a	n/a
39	POLR2A	chr10:99092566-99093008	IMR90	lung:	n/a	n/a
40	ZNF263	chr10:99092344-99094810	HEK293-T-REx	kidney:	n/a	chr10:99094297-99094318
41	TBP	chr10:99092575-99092898	HepG2	liver:	n/a	n/a
42	FOS	chr10:99092536-99093303	HUVEC	blood vessel:	n/a	n/a
43	ELF1	chr10:99092603-99092945	HepG2	liver:	n/a	n/a
44	RAD21	chr10:99092550-99093592	H1-hESC	embryonic stem cell:	n/a	n/a
45	POLR2A	chr10:99092404-99093018	HUVEC	blood vessel:	n/a	n/a
46	POLR2A	chr10:99092461-99093083	K562	blood:	n/a	n/a
47	MAZ	chr10:99092440-99095226	IMR90	lung:	n/a	n/a
48	SMARCC1	chr10:99092479-99093852	Hela-S3	cervix:	n/a	n/a
49	RAD21	chr10:99092573-99093396	MCF-7	breast:	n/a	n/a
50	RAD21	chr10:99092267-99093644	IMR90	lung:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:99089670..99092667-chr10:99113757..99116464,3	MCF-7	breast:
2	chr10:99037958..99038944-chr10:99092338..99093941,8	MCF-7	breast:
3	chr10:99050912..99053751-chr10:99091766..99095025,5	MCF-7	breast:
4	chr10:99092209..99093116-chr9:74980011..74980874,2	Hela-S3	cervix:
5	chr10:99048545..99053546-chr10:99092341..99096465,6	K562	blood:
6	chr10:99090785..99094308-chr10:99157737..99162145,4	MCF-7	breast:
7	chr10:99091261..99093952-chr10:99104801..99106882,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FRAT1-2	chr10:99092554-99093019	l_354_chr10:99084502-99093019_testes

No data

Variant related genes	Relation type
ENSG00000225850	TF binding region
ENSG00000269891	Chromatin interaction
ENSG00000107372	Chromatin interaction
ENSG00000231970	Chromatin interaction
ENSG00000052749	Chromatin interaction
ENSG00000213390	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045553	chr10:98944397-99122203	Strong transcription Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv540750	chr10:98944397-99122203	Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv831952	chr10:98998344-99145924	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv895914	chr10:99006083-99131676	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv825533	chr10:99070570-99115599	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
7	nsv825534	chr10:99081505-99115599	Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
8	esv15055	chr10:99091979-99092632	Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99086800-99093200	Transcr. at gene 5' and 3'	Primary neutrophils fromperipheralblood	blood
2	chr10:99088400-99093400	Transcr. at gene 5' and 3'	Monocytes-CD14+_RO01746	blood
3	chr10:99090800-99095000	Active TSS	HUES64 Cell Line	embryonic stem cell
4	chr10:99091000-99092800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr10:99091000-99092800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr10:99091200-99093200	Active TSS	iPS-15b Cell Line	embryonic stem cell
7	chr10:99091200-99093600	Flanking Active TSS	Brain Germinal Matrix	brain
8	chr10:99091200-99093800	Flanking Active TSS	Adipose Nuclei	Adipose
9	chr10:99091400-99093000	Active TSS	iPS-18 Cell Line	embryonic stem cell
10	chr10:99091400-99093400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr10:99091400-99093600	Flanking Active TSS	Fetal Muscle Leg	muscle
12	chr10:99091400-99093800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr10:99091400-99095000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
14	chr10:99091400-99095200	Active TSS	Brain Anterior Caudate	brain
15	chr10:99091400-99095400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr10:99091400-99095400	Active TSS	K562	blood
17	chr10:99091400-99095800	Active TSS	ES-I3 Cell Line	embryonic stem cell
18	chr10:99091400-99095800	Active TSS	HUES6 Cell Line	embryonic stem cell
19	chr10:99091600-99093000	Active TSS	HSMM	muscle
20	chr10:99091600-99093400	Flanking Active TSS	Primary T cells from cord blood	blood
21	chr10:99091600-99093400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
22	chr10:99091600-99093600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr10:99091600-99093800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
24	chr10:99091600-99094400	Flanking Active TSS	Primary hematopoietic stem cells	blood
25	chr10:99091600-99095400	Active TSS	H9 Cell Line	embryonic stem cell
26	chr10:99091800-99092800	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr10:99091800-99092800	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr10:99091800-99092800	Active TSS	Fetal Kidney	kidney
29	chr10:99091800-99093000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr10:99091800-99093200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
31	chr10:99091800-99093200	Flanking Active TSS	Fetal Brain Male	brain
32	chr10:99091800-99093400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
33	chr10:99091800-99093400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
34	chr10:99091800-99093400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
35	chr10:99091800-99093400	Flanking Active TSS	Thymus	Thymus
36	chr10:99091800-99093600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr10:99091800-99093600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
38	chr10:99091800-99093600	Flanking Active TSS	NHEK	skin
39	chr10:99091800-99093800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr10:99091800-99093800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
41	chr10:99091800-99093800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr10:99091800-99095000	Active TSS	Small Intestine	intestine
43	chr10:99091800-99095200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
44	chr10:99092000-99092800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr10:99092000-99093200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
46	chr10:99092000-99093400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr10:99092000-99093600	Flanking Active TSS	Placenta	Placenta
48	chr10:99092000-99093800	Flanking Active TSS	Osteobl	bone
49	chr10:99092000-99095000	Active TSS	Colonic Mucosa	Colon
50	chr10:99092000-99095000	Active TSS	Esophagus	oesophagus

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