Variant report

Variant	rs202203748
Chromosome Location	chr6:13634690-13634691
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:13634378..13636640-chr6:13639918..13642651,2	MCF-7	breast:
2	chr6:13615829..13619201-chr6:13633909..13638104,5	K562	blood:
3	chr6:13633178..13635073-chr6:13648017..13650938,2	MCF-7	breast:
4	chr6:13615100..13618262-chr6:13632919..13636030,3	K562	blood:
5	chr6:13633895..13638597-chr6:13710171..13713051,5	MCF-7	breast:
6	chr6:13634147..13636935-chr6:13665092..13667757,2	K562	blood:
7	chr6:13633189..13636123-chr6:13700882..13703156,2	K562	blood:

Variant related genes	Relation type
ENSG00000225921	Chromatin interaction
ENSG00000261071	Chromatin interaction
ENSG00000010017	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv1016744	chr6:13622143-13664028	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1019422	chr6:13622143-13694781	Strong transcription ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv1026597	chr6:13634669-13689882	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13616600-13637400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:13617200-13634800	Strong transcription	HUES64 Cell Line	embryonic stem cell
3	chr6:13617200-13634800	Strong transcription	Fetal Intestine Large	intestine
4	chr6:13617200-13638800	Weak transcription	Aorta	Aorta
5	chr6:13617400-13636400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr6:13617600-13634800	Strong transcription	Primary T cells from cord blood	blood
7	chr6:13617600-13635400	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr6:13617600-13642200	Strong transcription	Fetal Thymus	thymus
9	chr6:13617600-13642200	Strong transcription	HSMM	muscle
10	chr6:13617600-13642400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr6:13617800-13634800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr6:13617800-13638400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr6:13618000-13634800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr6:13618000-13634800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr6:13618000-13635400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr6:13618000-13641200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:13618000-13644200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr6:13618200-13635400	Strong transcription	Primary T cells fromperipheralblood	blood
19	chr6:13618200-13641800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr6:13618200-13644400	Strong transcription	K562	blood
21	chr6:13618200-13661200	Weak transcription	Fetal Brain Male	brain
22	chr6:13620000-13647200	Strong transcription	Dnd41	blood
23	chr6:13620000-13649600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:13620400-13660400	Weak transcription	Pancreas	Pancrea
25	chr6:13620600-13691000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr6:13622200-13636200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr6:13622200-13641600	Weak transcription	Right Ventricle	heart
28	chr6:13622800-13635200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr6:13622800-13637600	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr6:13622800-13638800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr6:13622800-13640800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr6:13623600-13637600	Weak transcription	Brain Substantia Nigra	brain
33	chr6:13623600-13656200	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr6:13625200-13638400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr6:13625200-13638600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr6:13625200-13638600	Weak transcription	Fetal Intestine Small	intestine
37	chr6:13625400-13660400	Weak transcription	Gastric	stomach
38	chr6:13625600-13637600	Weak transcription	NHLF	lung
39	chr6:13625600-13642600	Weak transcription	A549	lung
40	chr6:13626000-13660400	Weak transcription	Lung	lung
41	chr6:13626600-13637800	Weak transcription	Ovary	ovary
42	chr6:13626600-13667800	Weak transcription	Brain Cingulate Gyrus	brain
43	chr6:13626800-13637800	Weak transcription	Colonic Mucosa	Colon
44	chr6:13626800-13669000	Weak transcription	Brain Anterior Caudate	brain
45	chr6:13627200-13637600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr6:13628600-13634800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr6:13629000-13634800	Strong transcription	Rectal Mucosa Donor 31	rectum
48	chr6:13629400-13634800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
49	chr6:13630200-13636200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr6:13630400-13638400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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