Variant report

Variant	rs2022059
Chromosome Location	chr6:32156489-32156490
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:25)
CpG islands
(count:61)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:25 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:32148567-32159227	K562	blood:	n/a	n/a
2	POLR2A	chr6:32153472-32160911	K562	blood:	n/a	n/a
3	POLR2A	chr6:32149799-32156528	K562	blood:	n/a	n/a
4	POLR2A	chr6:32155836-32157503	PFSK-1	brain:	n/a	n/a
5	CEBPB	chr6:32156312-32156662	IMR90	lung:	n/a	chr6:32156470-32156481
6	CEBPB	chr6:32156408-32156608	A549	lung:	n/a	chr6:32156470-32156481
7	MAZ	chr6:32156177-32158836	K562	blood:	n/a	chr6:32157735-32157745 chr6:32158237-32158248
8	POLR2A	chr6:32155233-32156522	GM12892	blood:	n/a	n/a
9	MAZ	chr6:32155927-32158717	IMR90	lung:	n/a	chr6:32157735-32157745 chr6:32158237-32158248
10	CEBPB	chr6:32156156-32156690	K562	blood:	n/a	chr6:32156470-32156481
11	MAX	chr6:32155969-32156631	K562	blood:	n/a	n/a
12	POLR2A	chr6:32156269-32157515	K562	blood:	n/a	n/a
13	POLR2A	chr6:32156470-32157138	HUVEC	blood vessel:	n/a	n/a
14	POLR2A	chr6:32156479-32156527	Hela-S3	cervix:	n/a	n/a
15	CEBPB	chr6:32156309-32156599	Hela-S3	cervix:	n/a	chr6:32156470-32156481
16	MAX	chr6:32156406-32156593	K562	blood:	n/a	n/a
17	ZNF263	chr6:32156289-32157208	K562	blood:	n/a	chr6:32156669-32156690 chr6:32156637-32156658
18	POLR2A	chr6:32154430-32157228	HepG2	liver:	n/a	n/a
19	ZNF263	chr6:32156163-32157553	HEK293-T-REx	kidney:	n/a	chr6:32156669-32156690 chr6:32156637-32156658
20	CEBPB	chr6:32156282-32156657	K562	blood:	n/a	chr6:32156470-32156481
21	POLR2A	chr6:32153347-32159527	SK-N-MC	brain:	n/a	n/a
22	POLR2A	chr6:32156336-32157436	MCF10A-Er-Src	breast:	n/a	n/a
23	POLR2A	chr6:32156355-32156888	IMR90	lung:	n/a	n/a
24	POLR2A	chr6:32153318-32157715	GM12878	blood:	n/a	n/a
25	CEBPB	chr6:32156333-32156630	HepG2	liver:	n/a	chr6:32156470-32156481

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:32156482-32156532	HRE	kidney:	n/a
2	chr6:32156482-32156532	AG10803	skin:	n/a
3	chr6:32156482-32156532	HNPCEpiC	eye:	n/a
4	chr6:32156482-32156532	T-47D	breast:	n/a
5	chr6:32156482-32156532	ovcar-3	ovarian:	n/a
6	chr6:32156482-32156532	Caco-2	colon:	n/a
7	chr6:32156482-32156532	SAEC	small airway:	n/a
8	chr6:32156482-32156532	Hepatocyte	liver:	n/a
9	chr6:32156482-32156532	HIPEpiC	eye:	n/a
10	chr6:32156482-32156532	HCM	heart:	n/a
11	chr6:32156482-32156532	MCF-7	breast:	n/a
12	chr6:32156482-32156532	HCF	heart:	n/a
13	chr6:32156482-32156532	GM12891	blood:	n/a
14	chr6:32156482-32156532	K562	blood:	n/a
15	chr6:32156482-32156532	HMEC	breast:	n/a
16	chr6:32156482-32156532	AG09309	skin:	n/a
17	chr6:32156482-32156532	HUVEC	blood vessel:	n/a
18	chr6:32156482-32156532	PFSK-1	brain:	n/a
19	chr6:32156482-32156532	PrEC	prostate:	n/a
20	chr6:32156482-32156532	GM19239	blood:	n/a
21	chr6:32156482-32156532	HRCEpiC	kidney:	n/a
22	chr6:32156482-32156532	ECC-1	luminal epithelium:	n/a
23	chr6:32156482-32156532	HAEpiC	amniotic membrane:	n/a
24	chr6:32156482-32156532	HepG2	liver:	n/a
25	chr6:32156482-32156532	MCF10A-Er-Src	breast:	n/a
26	chr6:32156482-32156532	ProgFib	skin:	n/a
27	chr6:32156482-32156532	SKMC	muscle:	n/a
28	chr6:32156482-32156532	IMR90	lung:	fetal
29	chr6:32156482-32156532	HRPEpiC	eye:	n/a
30	chr6:32156482-32156532	AG04449	skin:	fetal
31	chr6:32156482-32156532	AG04450	lung:	fetal
32	chr6:32156482-32156532	NHDF-neo	bronchial:	n/a
33	chr6:32156482-32156532	Hela-S3	cervix:	n/a
34	chr6:32156482-32156532	BE2_C	brain:	n/a
35	chr6:32156482-32156532	LNCaP	prostate:	n/a
36	chr6:32156482-32156532	NH-A	brain:	n/a
37	chr6:32156482-32156532	GM06990	blood:	n/a
38	chr6:32156482-32156532	HPAEpiC	pulmonary alveolar:	n/a
39	chr6:32156482-32156532	SK-N-SH	brain:	n/a
40	chr6:32156482-32156532	NHBE	bronchial:	n/a
41	chr6:32156482-32156532	HEEpiC	esophagus:	n/a
42	chr6:32156482-32156532	RPTEC	kidney:	n/a
43	chr6:32156482-32156532	NT2-D1	testis:	n/a
44	chr6:32156482-32156532	SK-N-MC	brain:	n/a
45	chr6:32156482-32156532	GM12878	blood:	n/a
46	chr6:32156482-32156532	HCT-116	colon:	n/a
47	chr6:32156482-32156532	HL-60	blood:	n/a
48	chr6:32156482-32156532	AoSMC	blood vessel:	n/a
49	chr6:32156482-32156532	BJ	skin:	n/a
50	chr6:32156482-32156532	HCPEpiC	choroid plexus:	n/a

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:32096172..32100215-chr6:32154777..32158553,5	K562	blood:
2	chr6:31587809..31589938-chr6:32155791..32158478,2	K562	blood:
3	chr6:32134251..32137213-chr6:32156487..32158678,3	MCF-7	breast:

No data

Variant related genes	Relation type
PBX2	TF binding region
AGER	TF binding region
ENSG00000273333	TF binding region
PBX2	CpG island
ENSG00000273333	CpG island
AGER	CpG island
ENSG00000241404	Chromatin interaction
ENSG00000204315	Chromatin interaction
ENSG00000204469	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2071285	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2555457	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2555469	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2849017	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2854047	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2854050	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2854051	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2856437	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8192575	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9378121	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:42 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017945	chr6:31609641-32481240	Genic enhancers Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	322 gene(s)	inside rSNPs	diseases
2	nsv601950	chr6:31785438-32492308	Enhancers Bivalent Enhancer Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
3	nsv601951	chr6:31785438-32496748	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
4	nsv601955	chr6:31785453-32484368	Genic enhancers Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
5	nsv601956	chr6:31785453-32492308	Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
6	nsv601961	chr6:31868322-32484368	Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	126 gene(s)	inside rSNPs	diseases
7	esv2758043	chr6:31871512-32209113	Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
8	esv2759415	chr6:31871512-32209113	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
9	nsv601972	chr6:31947594-32484368	Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
10	nsv601975	chr6:31949352-32484368	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
11	nsv601976	chr6:31949352-32508887	Weak transcription Active TSS Bivalent Enhancer Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
12	nsv601977	chr6:31949352-32651056	Bivalent Enhancer Flanking Active TSS Genic enhancers Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
13	nsv601980	chr6:31950266-32484368	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
14	nsv601982	chr6:31951207-32484368	Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
15	nsv601983	chr6:31951367-32484368	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
16	nsv601984	chr6:31951912-32484368	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
17	nsv601999	chr6:31952422-32484368	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
18	nsv602000	chr6:31952422-32552416	Genic enhancers Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
19	nsv602015	chr6:31953467-32481507	Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
20	nsv602016	chr6:31953467-32484368	Weak transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
21	nsv602017	chr6:31953467-32505730	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
22	nsv602018	chr6:31953467-32509985	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
23	nsv602019	chr6:31953467-32779803	Transcr. at gene 5' and 3' Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
24	nsv602029	chr6:31955572-32484368	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
25	nsv602035	chr6:31959480-32484368	Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
26	nsv602036	chr6:31959878-32484368	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
27	nsv602052	chr6:31972034-32481507	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
28	nsv602053	chr6:31972034-32484368	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
29	nsv602054	chr6:31972034-32779803	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases
30	nsv602086	chr6:31986320-32484368	Enhancers Active TSS Genic enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
31	nsv1024599	chr6:32007556-32481240	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
32	nsv830629	chr6:32043978-32189787	Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
33	nsv1033939	chr6:32048657-32196256	Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
34	nsv462876	chr6:32064726-32171683	Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
35	nsv602104	chr6:32064726-32171683	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
36	nsv462877	chr6:32151443-32177900	Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
37	nsv602105	chr6:32151443-32177900	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
38	nsv884708	chr6:32154998-32172366	Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	48 gene(s)	inside rSNPs	diseases
39	nsv602106	chr6:32155448-32161430	Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	26 gene(s)	inside rSNPs	diseases
40	nsv884709	chr6:32155581-32166380	Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	48 gene(s)	inside rSNPs	diseases
41	nsv884710	chr6:32155581-32168595	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	48 gene(s)	inside rSNPs	diseases
42	nsv884711	chr6:32155581-32171683	Enhancers Active TSS Genic enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	48 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2022059	HLA-DQB1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:32146800-32156600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:32149800-32156600	Weak transcription	Stomach Mucosa	stomach
3	chr6:32152400-32160600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr6:32154000-32156600	Genic enhancers	Liver	Liver
5	chr6:32154600-32156800	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells short term culture	blood
6	chr6:32154800-32156800	Transcr. at gene 5' and 3'	Primary neutrophils fromperipheralblood	blood
7	chr6:32154800-32157000	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:32155200-32157000	Transcr. at gene 5' and 3'	Dnd41	blood
9	chr6:32155600-32156800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr6:32155600-32157600	Flanking Active TSS	Primary hematopoietic stem cells	blood
11	chr6:32155800-32156600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr6:32155800-32156600	Weak transcription	Aorta	Aorta
13	chr6:32155800-32156600	Enhancers	Pancreas	Pancrea
14	chr6:32155800-32156800	Transcr. at gene 5' and 3'	Breast Myoepithelial Primary Cells	Breast
15	chr6:32155800-32157000	Transcr. at gene 5' and 3'	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr6:32155800-32157200	Flanking Active TSS	Stomach Smooth Muscle	stomach
17	chr6:32155800-32157400	Transcr. at gene 5' and 3'	Fetal Intestine Small	intestine
18	chr6:32155800-32157400	Flanking Active TSS	HUVEC	blood vessel
19	chr6:32155800-32158600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr6:32155800-32158800	Active TSS	HSMM	muscle
21	chr6:32156000-32156600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
22	chr6:32156000-32156600	Transcr. at gene 5' and 3'	Fetal Intestine Large	intestine
23	chr6:32156000-32156600	Enhancers	Gastric	stomach
24	chr6:32156000-32156600	Active TSS	Osteobl	bone
25	chr6:32156000-32156800	Transcr. at gene 5' and 3'	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr6:32156000-32156800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
27	chr6:32156000-32157000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr6:32156000-32157200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr6:32156000-32157200	Flanking Active TSS	Duodenum Mucosa	Duodenum
30	chr6:32156000-32157200	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
31	chr6:32156000-32157400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr6:32156000-32157400	Flanking Active TSS	Adipose Nuclei	Adipose
33	chr6:32156000-32157400	Flanking Active TSS	Fetal Brain Female	brain
34	chr6:32156000-32157400	Flanking Active TSS	Fetal Muscle Trunk	muscle
35	chr6:32156000-32157600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr6:32156000-32158600	Active TSS	Colon Smooth Muscle	Colon
37	chr6:32156200-32156600	Active TSS	HUES6 Cell Line	embryonic stem cell
38	chr6:32156200-32156600	Active TSS	iPS-15b Cell Line	embryonic stem cell
39	chr6:32156200-32156600	Active TSS	iPS-20b Cell Line	embryonic stem cell
40	chr6:32156200-32156600	Transcr. at gene 5' and 3'	Primary T helper cells fromperipheralblood	blood
41	chr6:32156200-32156600	Transcr. at gene 5' and 3'	Primary T regulatory cells fromperipheralblood	blood
42	chr6:32156200-32156600	Active TSS	Brain Inferior Temporal Lobe	brain
43	chr6:32156200-32156600	Flanking Active TSS	Lung	lung
44	chr6:32156200-32156600	Flanking Active TSS	Rectal Smooth Muscle	rectum
45	chr6:32156200-32156600	Flanking Active TSS	HepG2	liver
46	chr6:32156200-32156800	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr6:32156200-32156800	Flanking Active TSS	HSMMtube	muscle
48	chr6:32156200-32157000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
49	chr6:32156200-32157000	Transcr. at gene 5' and 3'	K562	blood
50	chr6:32156200-32157000	Flanking Active TSS	NHEK	skin

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