Variant report

Variant	rs202222199
Chromosome Location	chr9:103188168-103188169
allele	-/GAA
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr9:103187945-103189004	MCF10A-Er-Src	breast:	n/a	chr9:103188243-103188254 chr9:103188810-103188822
2	MXI1	chr9:103188017-103189727	SK-N-SH	brain:	n/a	n/a
3	STAT3	chr9:103187934-103188542	MCF10A-Er-Src	breast:	n/a	chr9:103188243-103188254
4	FOS	chr9:103188027-103189171	MCF10A-Er-Src	breast:	n/a	chr9:103188954-103188965 chr9:103188954-103188966 chr9:103188956-103188964 chr9:103188955-103188965 chr9:103188955-103188965
5	RXRA	chr9:103188127-103188372	HepG2	liver:	n/a	n/a
6	STAT3	chr9:103187990-103189032	MCF10A-Er-Src	breast:	n/a	chr9:103188243-103188254 chr9:103188810-103188822
7	FOS	chr9:103188056-103189150	MCF10A-Er-Src	breast:	n/a	chr9:103188954-103188965 chr9:103188954-103188966 chr9:103188956-103188964 chr9:103188955-103188965 chr9:103188955-103188965
8	ARID3A	chr9:103188063-103189399	HepG2	liver:	n/a	n/a
9	POLR2A	chr9:103188125-103192385	IMR90	lung:	n/a	n/a
10	FOS	chr9:103188063-103188469	MCF10A-Er-Src	breast:	n/a	n/a
11	FOS	chr9:103188055-103188475	MCF10A-Er-Src	breast:	n/a	n/a
12	KAP1	chr9:103188063-103189338	HEK293	kidney:	n/a	chr9:103188805-103188813
13	CHD1	chr9:103187954-103192506	IMR90	lung:	n/a	n/a
14	FOSL2	chr9:103188084-103188336	HepG2	liver:	n/a	n/a
15	FOXA1	chr9:103188042-103188383	HepG2	liver:	n/a	n/a
16	MYC	chr9:103188117-103188545	MCF10A-Er-Src	breast:	n/a	n/a
17	ZNF143	chr9:103188045-103188303	K562	blood:	n/a	n/a
18	MYC	chr9:103188168-103188464	MCF10A-Er-Src	breast:	n/a	n/a
19	STAT3	chr9:103188036-103188537	MCF10A-Er-Src	breast:	n/a	chr9:103188243-103188254

No.	Distal block	Cell Line	Cell type
1	chr9:102580552..102583439-chr9:103187663..103189259,2	MCF-7	breast:
2	chr9:103187168..103189222-chr9:103356564..103358499,2	K562	blood:
3	chr9:103108891..103111879-chr9:103188016..103191736,3	K562	blood:
4	chr9:103113279..103116752-chr9:103187119..103190910,6	K562	blood:
5	chr9:103182521..103185122-chr9:103187370..103189359,3	K562	blood:
6	chr9:103176909..103179543-chr9:103186659..103188308,2	K562	blood:
7	chr9:103185149..103186826-chr9:103187204..103188970,2	K562	blood:
8	chr9:103187999..103190908-chr9:103233595..103236918,6	MCF-7	breast:
9	chr9:103112743..103119519-chr9:103186928..103191502,9	MCF-7	breast:
10	chr9:103112020..103116853-chr9:103187928..103193300,12	MCF-7	breast:
11	chr9:103113751..103117482-chr9:103187755..103190910,6	K562	blood:

Variant related genes	Relation type
MSANTD3	TF binding region
ENSG00000241697	Chromatin interaction
ENSG00000237461	Chromatin interaction
ENSG00000136891	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv825012	chr9:103152205-103256281	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv614955	chr9:103181596-103261227	ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	esv3443911	chr9:103188156-103191004	Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103174600-103188800	Weak transcription	Esophagus	oesophagus
2	chr9:103180400-103188600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr9:103182000-103188600	Weak transcription	HSMM	muscle
4	chr9:103184200-103188200	Weak transcription	Fetal Heart	heart
5	chr9:103184200-103188600	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr9:103185200-103188200	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr9:103187600-103188200	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr9:103187600-103188400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr9:103188000-103188200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr9:103188000-103188200	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr9:103188000-103188200	Weak transcription	Aorta	Aorta
12	chr9:103188000-103188200	Enhancers	Hela-S3	cervix
13	chr9:103188000-103188200	Enhancers	HepG2	liver
14	chr9:103188000-103188200	Enhancers	HMEC	breast
15	chr9:103188000-103188200	Enhancers	NHEK	skin
16	chr9:103188000-103188400	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr9:103188000-103188400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr9:103188000-103188400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr9:103188000-103188400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr9:103188000-103188400	Enhancers	HUVEC	blood vessel
21	chr9:103188000-103188400	Enhancers	NHDF-Ad	bronchial
22	chr9:103188000-103188600	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr9:103188000-103188600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr9:103188000-103188600	Enhancers	Muscle Satellite Cultured Cells	--
25	chr9:103188000-103188600	Flanking Active TSS	A549	lung
26	chr9:103188000-103188600	Enhancers	K562	blood
27	chr9:103188000-103188600	Enhancers	NHLF	lung
28	chr9:103188000-103188800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr9:103188000-103188800	Enhancers	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links