Variant report

Variant	rs202234240
Chromosome Location	chr5:116289353-116289354
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527974	chr5:115987168-116303678	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1033140	chr5:116035131-116314673	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1020292	chr5:116183712-116349633	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1033379	chr5:116244963-116464338	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv882750	chr5:116252792-116292091	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv1017455	chr5:116261466-116302129	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv969206	chr5:116288516-116300472	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116280000-116289600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:116287200-116291000	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr5:116288200-116290600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:116288400-116289600	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr5:116288400-116289800	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr5:116288400-116290000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr5:116288400-116290000	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr5:116288600-116289400	Active TSS	Brain Anterior Caudate	brain
9	chr5:116288600-116289400	Active TSS	Brain Inferior Temporal Lobe	brain
10	chr5:116288600-116289600	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr5:116288800-116289400	Active TSS	Brain Angular Gyrus	brain
12	chr5:116288800-116289600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr5:116288800-116289800	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr5:116288800-116289800	Active TSS	Brain Cingulate Gyrus	brain
15	chr5:116288800-116290000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr5:116289000-116289600	Active TSS	Brain Hippocampus Middle	brain
17	chr5:116289000-116289800	Active TSS	Brain Substantia Nigra	brain
18	chr5:116289000-116290000	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr5:116289200-116290000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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