Variant report

Variant	rs2024559
Chromosome Location	chr6:128353603-128353604
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:128347769..128351235-chr6:128351305..128354461,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000227945	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2024558	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033443	chr6:128306654-128899203	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv538440	chr6:128306654-128899203	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128289000-128431000	Weak transcription	Psoas Muscle	Psoas
2	chr6:128293600-128374400	Weak transcription	Pancreas	Pancrea
3	chr6:128307800-128370800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:128311600-128387200	Weak transcription	NH-A	brain
5	chr6:128311800-128378400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr6:128314000-128367400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:128320800-128357800	Weak transcription	Fetal Intestine Small	intestine
8	chr6:128320800-128388200	Weak transcription	NHEK	skin
9	chr6:128326600-128356600	Weak transcription	HSMM	muscle
10	chr6:128326600-128388200	Weak transcription	HMEC	breast
11	chr6:128337400-128378400	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr6:128341200-128374400	Weak transcription	HSMMtube	muscle
13	chr6:128342200-128371000	Weak transcription	Liver	Liver
14	chr6:128342600-128388600	Weak transcription	Fetal Brain Female	brain
15	chr6:128344600-128369200	Weak transcription	Ovary	ovary
16	chr6:128347000-128374400	Weak transcription	Esophagus	oesophagus
17	chr6:128347000-128405200	Weak transcription	Lung	lung
18	chr6:128350000-128370000	Weak transcription	Placenta	Placenta
19	chr6:128350000-128401000	Weak transcription	Small Intestine	intestine
20	chr6:128350200-128355200	Enhancers	Fetal Thymus	thymus
21	chr6:128350400-128374200	Weak transcription	Gastric	stomach
22	chr6:128350600-128374200	Weak transcription	Fetal Stomach	stomach
23	chr6:128350800-128360200	Weak transcription	Primary B cells from peripheral blood	blood
24	chr6:128351400-128378600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr6:128351400-128385000	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr6:128351600-128371000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr6:128351600-128375000	Weak transcription	Brain Anterior Caudate	brain
28	chr6:128351800-128361400	Weak transcription	Brain Cingulate Gyrus	brain
29	chr6:128352200-128355600	Enhancers	Primary T cells from cord blood	blood
30	chr6:128352400-128355400	Enhancers	Thymus	Thymus
31	chr6:128352400-128378400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr6:128353000-128354600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
33	chr6:128353000-128354800	Enhancers	Dnd41	blood
34	chr6:128353000-128355600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
35	chr6:128353000-128357200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr6:128353200-128354000	Enhancers	Primary T helper naive cells from peripheral blood	blood
37	chr6:128353200-128354000	Enhancers	Primary T killer memory cells from peripheral blood	blood
38	chr6:128353200-128354600	Enhancers	Primary T helper cells PMA-I stimulated	--
39	chr6:128353200-128388400	Weak transcription	NHLF	lung
40	chr6:128353400-128354000	Strong transcription	Primary B cells from cord blood	blood
41	chr6:128353400-128374400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr6:128353400-128378600	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr6:128353400-128378600	Weak transcription	Osteobl	bone
44	chr6:128353600-128354800	Weak transcription	Primary T cells fromperipheralblood	blood
45	chr6:128353600-128357200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr6:128353600-128358200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr6:128353600-128359600	Weak transcription	Fetal Heart	heart
48	chr6:128353600-128369200	Weak transcription	Fetal Intestine Large	intestine
49	chr6:128353600-128370000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr6:128353600-128371000	Weak transcription	HepG2	liver

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